Pseudomonas donghuensis: BV82_4097
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Entry
BV82_4097 CDS
T07361
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV82_4097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdw03019
]
BV82_4097
03009 Ribosome biogenesis [BR:
pdw03009
]
BV82_4097
Enzymes [BR:
pdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BV82_4097
Messenger RNA biogenesis [BR:
pdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV82_4097
Ribosome biogenesis [BR:
pdw03009
]
Prokaryotic type
rRNA helicases
BV82_4097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
KDN98199
UniProt:
A0AAP0XC56
LinkDB
All DBs
Position
complement(4174630..4176291)
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AA seq
553 aa
AA seq
DB search
MTQETGGFAALELHPSIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPASIRAIAERHLREPKHVKIQSKTQTVTAIEQAHLMVHADQKVSAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLEAVEKEQPLVPTYTPRERTGDRPERGERERRAPMPLGEGRARCR
TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLTKLKDTRV
AGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgaacttcatccgagcattgttgctgca
gtgctggctaccggctacgaagagccgtccgccattcagcagcaatcgatcccgattatt
ctcgctggtcacgacatgatcggtcaggcgcagaccggtaccggtaaaaccgctgccttc
gctctgccaatcctgcaccgcatcgacccgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcag
atgccgggcgtaaccgtggtggccgtgtacggtggtgccccgatgggcccacaactgaaa
gctatccgtaacggcgcgcaaatcgtcgttgctaccccgggccgtctgtgcgaccacctg
cgtcgcgacgagaaggtcctggcgaccgtcaaccacctggtgctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctcgaagtgatcttcaaggccatgccggaaagc
cgtcagaccgtgctgttctcggccaccctgcctgcttcgatccgtgccatcgccgagcgc
cacctgcgcgagccgaagcacgtcaagatccagagcaagacccagaccgtcaccgccatt
gaacaagcccacctgatggtccacgccgaccagaaggtttccgctgtcctgcgcctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcggaccaagcaagccaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgtctggacatcgtcgtc
gccaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtc
gacatgccgtatgaccctgagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgtgaaggccgtgcgctgctgctggttaccccgcgcgagcgtcgcatgctgcaggtgatc
gagcgtgtgaccggtcagaaagttgccgaagttcgcctgccgaacgctcaggccgttctc
gatgcccgcatcaagaagctgaccaacagcttggcgccgttggttgccgatgctgagtcg
acccacggtgatctgcttgatcgcctgactgccgacatcggttgcagcccacgtgccctg
gccgctgccctgctgcgcaaggctaccaacggtcaggccctgaccctggaagccgtcgag
aaagagcagccgctggttccgacctacaccccgcgtgagcgcactggcgatcgtccagag
cgtggcgagcgtgagcgtcgtgcaccgatgccgctgggcgaaggtcgtgctcgctgccgt
accgcgctgggcgcgcgtgacggtatcgccgccaagaacctgctgggcgccatcctcaac
gaaggcggcctggcccgcgaagccatcggccgcatccaggtgcgcgacagcttcagcctg
gtcgagctgccggaagaaggcctggagcgtctgctgaccaagctcaaggacactcgtgtt
gccggcaagcagctgaagctgcgccgttaccgcgaagactga
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