Pseudomonas donghuensis: BV82_4575
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Entry
BV82_4575 CDS
T07361
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BV82_4575 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_4575 (sbcB)
Enzymes [BR:
pdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BV82_4575 (sbcB)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BV82_4575 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BV82_4575 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BV82_4575 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
KDN97715
UniProt:
A0AAP0SFG6
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All DBs
Position
complement(4697815..4699245)
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AA seq
476 aa
AA seq
DB search
MSSSIFWHDYETTGINPRNDRPLQVAGVRTDLELNEIEAPINFYCQPSDDILPHPKACLV
TGITPQQLASQGLSEAEFMTRVHAELARPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDIVRAAYALRPDGIEWPQQDGRTSLRLELLTAANGIDHGQAHEALSDV
RATIALARLIRQKQPKLYDWLFQLRSKQKVLDQIRLLQPLVHISGRFSAARNYLGVVLPL
AWHPRNRNALIVCDLHLDAQPLIDEDADSLRQRLYTRREEMPDGQLPVPLKLIHINRCPV
VAPLSVLRGEDQQRLELDMSVYQARAASLIATAGQWQDKLPVIYSAEEFAPSEDPEQQLY
DGFLGDRDRRLCEQVRSVDPQQLGQGQWMFDDERLPELLFRYRARNFNETLNAEERQRWQ
TFCQQRLSDPLMGAPNTLGDFERALQDCWAEADAQQQALLGQWRSHVQALKLQLGM
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccagcattttctggcacgactacgaaaccaccggcatcaacccgcgcaacgac
cggcccttgcaggttgccggggtgcgcaccgacctcgagctcaatgagatcgaggcgccg
atcaacttctattgccagcccagcgacgacatcctgccgcaccccaaggcttgcctggtc
accggcatcaccccgcagcaactggccagccagggcttgagcgaagccgagttcatgacc
cgggtacatgccgaactggcacgtccgggcacctgtggcgccggctacaacagcctgcgc
ttcgatgatgaagtcactcgttacagcctgtatcgcaacttctttgatccttacgcccgc
gagtggcagggcggcaacagccgctgggacctgatcgacatcgtccgcgccgcctatgct
ctgcgcccggacgggattgaatggccgcaacaggacgggcgcaccagtttgcgcctggag
ttgctcaccgccgccaacggcatcgaccatggtcaggcacacgaagcgttgtcggacgtg
cgcgcgacaattgcacttgcgcgattgatccgacagaaacaacccaagctctatgactgg
ttgtttcaactgcgcagcaagcagaaagtcctcgaccagattcgattgttacagccgctg
gtgcatatttccggtcgtttttcggcggcacgtaattatctgggggtggtattacccctg
gcctggcatccgcgtaatcgcaatgccttgatcgtctgtgacctgcatctggatgcgcag
cccttgatcgatgaggatgctgattcactgcgtcagcgtttatacacacgtcgcgaggaa
atgcctgacggacaattgccggtaccgctgaaattaatccacatcaatcgctgcccggta
gtcgcccccttaagtgtattgcgtggggaagatcagcagcggctggaactggatatgtct
gtttatcaggcgcgcgctgccagcctgattgccacggcagggcaatggcaagacaaattg
ccagtaatctacagcgccgaggagtttgcccccagcgaagatccggaacagcagttgtat
gatggctttcttggcgaccgtgatcgtcggttatgcgagcaagtgcgcagtgtcgatcca
cagcagttggggcagggccagtggatgtttgatgatgaacgtttaccggaactgttgttt
cgctatcgtgcgcgtaatttcaacgaaaccttgaatgccgaggagcgccagcgctggcag
accttttgccagcaacgcctgagtgatccgttgatgggggcacccaataccctcggtgat
ttcgagcgggccttgcaggactgttgggcagaggccgatgcccagcagcaggcgctgctt
ggtcagtggcgcagccatgtgcaggcattgaagttgcaattgggaatgtaa
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