Pseudomonas donghuensis: BV82_4677A
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Entry
BV82_4677A CDS
T07361
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV82_4677A (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdw03019
]
BV82_4677A (rhlB)
Enzymes [BR:
pdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BV82_4677A (rhlB)
Messenger RNA biogenesis [BR:
pdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV82_4677A (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
KDN97817
UniProt:
A0AAP0SER9
LinkDB
All DBs
Position
4807314..4808747
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AA seq
477 aa
AA seq
DB search
MTVLKALKKMFGKSEVEQLATETAAPVKQPPAAPQAPAPSAPLKTEAPAPVRAEKPAEAK
PRRERKPKPAASTWKLEDFAVEPQEGKTRFHDFKLSPELMHAIHDLGFPYCTPIQAQVLG
YTLRGKDAIGRAQTGTGKTAAFLISIITQLQQTPPPKERYMGEPRALIIAPTRELVVQIA
KDAAALTKYTGLNVMTFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEAHLDMVE
VLVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAKQWTTDPAIVE
IEPENVASETVEQHVYAVAGSDKYKLLYNLVTENKWERVMVFANRKDEVRRIEERLVRDG
VNAAQLSGDVPQHKRIKTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDY
VHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKISCEMPPTELLKPVPRKHH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggcaagagcgaggttgagcaactcgcc
accgaaaccgctgcccccgtgaagcagccgcccgcagcaccccaggcccctgccccgtcg
gcaccgctcaagaccgaggcccctgccccggttcgcgccgaaaaaccggctgaggccaag
ccgcgccgtgagcgcaagccaaaacccgcagcctccacctggaagctggaagacttcgcc
gtcgagccgcaggaaggcaagacccgcttccatgacttcaagctctcgcccgagctgatg
catgcgatccacgacctcggcttcccgtattgcacgccgatccaggcccaggtcctgggt
tacaccctgcgtggcaaagacgccatcggccgggcccagaccggcaccggcaagaccgca
gccttcctgatttcgatcattacccagctgcagcagaccccgccgccaaaagagcgctac
atgggcgagcctcgggcgctgatcattgccccgacccgcgaactggtcgtacagatcgcc
aaagacgccgcggcactgaccaaatacaccggcctgaacgtcatgaccttcgtcggtggc
atggacttcgacaagcagctcaaggccctcgaagcccgccactgcgacatcctggtggcc
accccgggccgtctgctggacttcaaccagcgcggcgaagcgcacctggacatggtcgaa
gtgctggtcctggacgaagccgaccgcatgctcgacatgggcttcatcccccaggttcgg
cagatcatccgccagaccccacccaagagcgagcgccagaccctgctgttctcggctacc
ttcaccgaagacgtgatgaacctggccaagcagtggaccacggacccggcaatcgtcgag
atcgaaccggagaatgtcgccagcgaaaccgtcgagcagcacgtctatgccgtggccggc
agtgacaagtacaagctgctgtacaacctggtgaccgagaacaagtgggaacgggtgatg
gtctttgccaaccgcaaggacgaagtgcggcgcatcgaggagcgcctggtgcgcgacggc
gtcaacgccgcccaactgtcgggcgacgtgccgcagcacaagcggatcaagaccctggag
agcttccgcgaagggcgcatcaccgtgctggtggccaccgatgtggctggccgcggtatc
catatcgacggcatcagccatgtgatcaacttcaccctgccggaagacccggacgactac
gtgcaccgtatcggccgtaccggccgtgccggcaccagcggcgtgtcaatcagcttcgct
ggtgaagacgactcctaccagctgccggccatcgaagcgctgctgggacgcaagatcagc
tgcgagatgccgccaaccgagctgctcaagccggtaccgcgcaagcatcactga
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