Pseudonocardia dioxanivorans: Psed_0628
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Entry
Psed_0628 CDS
T01479
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pdx
Pseudonocardia dioxanivorans
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdx03000
]
Psed_0628
Transcription factors [BR:
pdx03000
]
Prokaryotic type
Helix-turn-helix
Other families
Psed_0628
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
GAF
HTH_50
Sigma54_activ_2
HTH_30
HTH_28
Sigma54_activat
HTH_29
Phage_NinH
HTH_22
HTH_17
AAA_16
ABC_tran
HTH_23
nSTAND3
HTH_7
Motif
Other DBs
NCBI-ProteinID:
AEA22891
UniProt:
F4CTT2
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All DBs
Position
complement(685729..687639)
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AA seq
636 aa
AA seq
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MAGGCVQEGNRLVHSTEHSTPHSSQPATDAGSEEAKVPVGAAAARVAEARSAFLTDESVE
PGVVRAPILASWTRSRNFQVPVDHLDLPYETAFDSDSLLARAAGPILAEMSDQLATEPVS
VILCDDDGVVLDRRSTDTKLNQGLDRIWLAPGFSYAERYVGTNGIGTALEGRGPALVFGH
EHYVEHLEDFACAGAPIRHPVSGKLLGVIDLTCWRREANRMMVAVATNIARRIEETLLDH
SGRRELSLLHDYLAACQRNRGAVFAIGDDLLMMNDQARQLVDPADQSSLLSHAAEALSTG
RRRQLLVDLPSGAIARVQTRPSWGEHGVHGGVLHVQLVAAEAAPTRSLSLPPPTALPAAV
GSGPLWTKCVQAVDRHLQAREWLVLEGEAGSGKRTLARATHQLRNPAAHLRVMDAQDFGP
RWLADVREELETGNGGTLVLCHVDTLPPDAMRALADALEPHRESTDPERPWLVATVDRGR
EDTAADMIELLDSFPRTIEVPPLRHHIEDVAELVPHLIARLTRGSDLTCSPEAMRVLMRN
RWPGNVEQLYQVLRKIVARKRSGTIAPADLPAETRAITRRVLTPLEAIECDAIVDALLDT
DGNKAEAARQLGMSRATIYRKIRGYGISLPQLADSR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggtggctgcgtccaggagggcaaccggttggtccactcgacggaacactcgacc
ccccactcctcgcagccggcgacggacgccggaagcgaggaagccaaggtgcccgtcggc
gcagccgccgcgcgtgtggcggaggcccggtcggcgttcctgaccgacgagagcgtcgaa
ccgggcgtcgtgcgcgcccccatcctggcctcgtggacgcggtcgcggaacttccaggtt
ccggtcgaccacctcgatctgccgtacgagacggcgttcgactccgactcgctgctcgcg
cgcgccgccggcccgatcctggccgagatgagcgaccagctcgcgaccgagccggtgagc
gtcatcctgtgcgacgacgacggcgtcgtcctcgaccggcgcagcaccgacaccaagctc
aaccaggggctcgaccgcatctggctcgcccccggcttcagctacgccgagcgctacgtc
ggcaccaacggcatcggcacggccctggaggggcgcggcccggcgctggtcttcggccac
gagcactacgtcgagcacctcgaggacttcgcctgcgcgggggccccgatccgccatccc
gtcagcggcaagctgctcggcgtcatcgacctgacctgctggcggcgcgaggcgaaccgg
atgatggtcgccgtcgcgaccaacatcgcgcgacgcatcgaggagacgctgctcgaccac
tccggccggcgcgagctgtccctgctgcacgactacctggccgcctgccagcgcaaccgc
ggcgcggtgttcgccatcggcgacgacctgctgatgatgaacgaccaggcccggcagctc
gtcgatccggccgaccagagctcgctgttgtcgcacgccgccgaggcgctctcgaccggc
cgccgtcgccagctgctcgtcgacctgcccagcggcgcgatcgcccgcgtccagacccgg
ccgagctggggtgagcacggcgtccacggcggcgtcctgcacgtccagctcgtcgcggcg
gaggcggccccgacccggtcgctgagcctgccgccgcccaccgcgctgccggccgccgtc
ggctccggcccgctgtggaccaagtgcgtacaggccgtcgaccggcacctgcaggcgcgg
gagtggctcgtcctcgagggcgaggccggctcgggcaagcgcaccctggcgcgcgccacc
caccagctccgcaacccggccgcccacctgcgggtcatggacgcgcaggacttcgggccg
cgctggctcgccgacgtccgcgaggagctcgagacgggcaacggcggcaccctggtgctc
tgccacgtcgacacgctgccgcccgacgccatgcgtgcgctggccgacgcgctggagccg
caccgcgagtcgaccgacccggagcggccgtggctcgtggcgacggtcgaccgcggccgc
gaggacaccgccgcggacatgatcgagctgctggactcgttcccgcgcacgatcgaggtg
ccgccgctgcgtcaccacatcgaggacgtcgccgagctcgttccgcacctgatcgcgcgg
ctgacccgcggctcggacctcacgtgctccccggaggcgatgcgcgtcctcatgcgcaac
cgctggcccggcaacgtcgagcagctctaccaggtgctgcgcaagatcgtggcgcgcaag
cggtccggcacgatcgccccggccgacctcccggccgagacccgcgcgatcacccgccgc
gtcctcaccccgctcgaggcgatcgagtgcgacgcgatcgtcgacgcgctgctcgacacc
gacggcaacaaggccgaggcggcccgccagctcggcatgtcgcgcgcgacgatctatcgc
aagatccgcggctacggcatctcgctgccgcagctggccgactcccgctga
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