Pseudonocardia dioxanivorans: Psed_0901
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Entry
Psed_0901 CDS
T01479
Name
(GenBank) Uracil-DNA glycosylase superfamily
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Psed_0901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_0901
Enzymes [BR:
pdx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Psed_0901
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Psed_0901
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
TAF1C_HB
Motif
Other DBs
NCBI-ProteinID:
AEA23155
UniProt:
F4CTY0
LinkDB
All DBs
Position
960336..961049
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AA seq
237 aa
AA seq
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MSAPATLALLDDEVSRCRACPRLVAWREKVAAEKRAAYRDQTYWGRPVPGFGPADAALLI
VGLAPAAHGGNRTGRMFTGDRSGDVLYAALHAVGLANQPIAVSADDGLALRGTRITAPVH
CAPPDNKPTTEERDTCRRWLDAELALLAPTLRTVVVLGAFGWQSLLPVLGENGWDVPRPR
PRFGHGAHVVLTGRRGPLQVFGSYHVSQQNTFTGKLTPAMLEDVLRAAGRSAGLIDG
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcccccgcgacgctcgccctcctcgacgacgaggtgtcgcgctgccgcgcgtgc
ccccggctggtggcctggcgggagaaggtcgccgcggagaagcgcgccgcgtaccgcgac
cagacctactgggggcggccggtccccggcttcggtcccgccgacgccgcgctgctgatc
gtcgggctcgcgcccgccgcgcacggcggaaaccgcaccggccggatgttcaccggcgac
cgctccggcgacgtcctctacgccgccctgcacgccgtcggcctggccaaccagccgatc
gccgtctcggccgacgacgggctcgccctgcgcggcaccaggatcaccgccccggtgcac
tgcgccccgcccgacaacaagcccacgaccgaggagcgcgacacctgccgccgctggctc
gacgccgagctcgcgctgctggcgccgacgttgcgcacggtcgtcgtgctcggggcgttc
gggtggcagtcgctgctgccggtgctcggcgagaacgggtgggacgtcccccggccccgg
ccgcgcttcgggcacggcgcgcacgtcgtcctgaccgggcgccggggcccgctgcaggtc
ttcggcagctaccacgtcagccagcagaacaccttcaccgggaagctcacgccggcgatg
ctcgaggacgtgctccgggccgccggccggtccgctggtctgatcgacggctga
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