KEGG   Pseudonocardia benzenivorans: Psed_0941
Entry
Psed_0941         CDS       T01479                                 
Name
(GenBank) threonine dehydratase
  KO
K01754  threonine dehydratase [EC:4.3.1.19]
Organism
pdx  Pseudonocardia benzenivorans
Pathway
pdx00260  Glycine, serine and threonine metabolism
pdx00290  Valine, leucine and isoleucine biosynthesis
pdx01100  Metabolic pathways
pdx01110  Biosynthesis of secondary metabolites
pdx01200  Carbon metabolism
pdx01230  Biosynthesis of amino acids
Module
pdx_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Psed_0941
   00290 Valine, leucine and isoleucine biosynthesis
    Psed_0941
Enzymes [BR:pdx01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.19  threonine ammonia-lyase
     Psed_0941
SSDB
Motif
Pfam: PALP ACT ACT_4 ACT_6 CgnE_B
Other DBs
NCBI-ProteinID: AEA23193
UniProt: F4CIX3
LinkDB
Position
999859..1001157
AA seq 432 aa
MVDDPRPSASSARVEDGPPVRLADVEAARDLLRGVVRRTPTLPARALSELVGAPVWLKCE
NQQRTGSFKIRGAYTRISRLAAEERARGVVAASAGNHAQGVALAARLLGTTATVFMPERA
ALPKVSATRGYGAQVRLAGETIDGSLAEAVRFADETGAVLVHPFDHVDVIAGQGTVGLEI
LDDVPDAATVLVPAGGGGLLGGIAAAVRGRRPDVRVVGVQAEAAAAWPPSLLAGRPVALD
RMRTIADGIAVGVPGNVTYPQVAGLVDEFVTVGEDTLARALLHCLERAKLLVEPAGAAAV
AALLEQPTRFPGPVVAVLSGGNIDPLVLLHVIEHGMAAAARYLSMRVRVVDRPGALAELL
TQIGDLGANVVDVEHTRISAAIPLGDVDVQLSLETRGATHSAAIVDALRNSGHAVFDEAG
APWGSGDVAAAG
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggtcgacgatccccgtccgtccgcgtcgtccgcccgggtcgaggacggcccgccggtc
cgcctcgcggacgtggaggcggcccgcgacctgctgcggggcgtcgtgcggcggacgccg
acgctgccggcgagggcgctgtcggagctggtcggcgcgccggtgtggctgaagtgcgag
aaccagcagcgcaccgggtcgttcaagatccgcggcgcgtacacacgcatctcccggctg
gccgccgaggagcgcgcccgcggtgtcgtcgccgccagcgcgggcaaccacgcgcagggt
gtcgccctggcggcgcggctgctcggcacgaccgcgaccgtcttcatgcccgagcgggcc
gcgctgccgaaggtgtccgcaacccgcggctacggcgcgcaggtccggctggcgggggag
acgatcgacggcagcctcgccgaggccgtgcggttcgccgacgagaccggcgccgtcctc
gtgcaccccttcgaccacgtcgacgtcatcgccggacagggcaccgtcggactggagatc
ctcgacgacgtccccgacgccgccaccgtcctggtgccggcgggcggcggcgggctgctc
ggcggcatcgccgcggcggtccgcggccgccggcccgacgtgcgggtcgtgggcgtccag
gccgaggcggcggccgcgtggcccccgtcgctgctcgcgggcaggccggtggcgctggac
cggatgcggaccatcgccgacgggatcgccgtcggcgtaccggggaacgtcacgtacccg
caggtcgccggcctggtcgacgagttcgtcacggtcggggaggacaccctcgcccgcgcg
ctgctgcactgtctggagcgcgcgaagctgctggtcgagcccgcgggtgccgccgccgtc
gccgcgctgctggagcagcccacgcggttcccaggtcccgtggtggcggtgctctcgggc
ggcaacatcgacccgctggtcctgctgcacgtcatcgagcacggcatggccgccgcggcg
cgctacctgtcgatgcgggtgcgcgtcgtcgaccgtcccggcgcactggccgagctgctc
acacagatcggggacctgggcgccaacgtcgtcgacgtcgagcacacccggatctccgcg
gccatcccgctcggcgacgtcgacgtccagctgagcctggagacgcgcggcgcgacgcac
tccgccgccatcgtggacgcgctacggaactccggccacgccgtgttcgacgaggccgga
gctccgtgggggtccggggacgtggcggcagccgggtga

KEGG   Pseudonocardia benzenivorans: Psed_2549
Entry
Psed_2549         CDS       T01479                                 
Name
(GenBank) L-serine dehydratase 1
  KO
K01752  L-serine dehydratase [EC:4.3.1.17]
Organism
pdx  Pseudonocardia benzenivorans
Pathway
pdx00260  Glycine, serine and threonine metabolism
pdx00270  Cysteine and methionine metabolism
pdx01100  Metabolic pathways
pdx01110  Biosynthesis of secondary metabolites
pdx01200  Carbon metabolism
pdx01230  Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Psed_2549
   00270 Cysteine and methionine metabolism
    Psed_2549
Enzymes [BR:pdx01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.17  L-serine ammonia-lyase
     Psed_2549
SSDB
Motif
Pfam: SDH_alpha SDH_beta
Other DBs
NCBI-ProteinID: AEA24752
UniProt: F4CZ48
LinkDB
Position
complement(2693456..2694838)
AA seq 460 aa
MTVSVFELFSIGIGPSSSHTVGPMRAGARFAEELCADGVLDEVAELEVVLYGSLAATGAG
HGTLPAVLLGLEGRHPERISGDRVRTRAAEIADCGHIRLGGVREVPQRIDDIVLRPHTVL
PEHPNGLTLTVRNGAGTTLREKTYFSVGGGFVVENDEVDVATVDDGPGSPFRTAQELLER
CADSGSSISDVMLAFECRSRSEADVRKGLLEIRDVMWECVGRGITQDGELPGGLSVERRA
RSWYERLRIEDPQREPAYALDWVNLVAMAVNEENAAGGRIVTAPTNGAAGIVPAVLHYAT
HYTPLGPSDPDETAVCFLLTAGAIGSLYKERASISGAEVGCQGEVGSAASMAAAGLAEVL
GGTPAQVENAAEIAMEHSLGLTCDPIGGLVQIPCIERNAISAGKAVNAARMALRGDGRHR
VSLDQVITTMRETGRDMSDKYKETSRGGLALTIPVNVVEC
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgacggtgagcgtcttcgagctgttctcgatcggtatcgggccgtcgagctcgcacacg
gtcggtccgatgcgggccggcgcccggttcgccgaggagctgtgcgcggacggtgtgctc
gacgaggtcgcggagctcgaggtggtgctctacggctcgcttgccgcgaccggcgccggg
cacggcacgctcccggcggtgctgctcggcttggagggacgccatcccgagcggatcagc
ggtgaccgggtccggacccgagccgcggagatcgccgactgcgggcacatccggctcggc
ggcgtccgcgaggtgccgcagcggatcgacgacatcgtgctgcggccccacaccgttctg
cccgaacaccccaacggtctgaccctcaccgtccgcaacggtgcaggcacgaccctgcgc
gagaagacctacttctcggtcggcggcggtttcgtcgtcgagaatgacgaggtcgacgtg
gccaccgtcgacgacgggcccggcagcccgttccggacggcgcaggagctgctcgaacgc
tgcgccgactcgggctcctccatcagcgacgtcatgctcgccttcgagtgccggtcgcga
tccgaggctgacgtgcggaagggcctcctcgagatccgcgacgtcatgtgggagtgcgtg
ggccggggcatcacgcaggacggtgagttgcccggcggcttgtccgtggagcggcgcgcc
cgcagctggtacgagcggctgcgcatcgaggacccgcagcgcgagcccgcctacgccctc
gactgggtcaacctcgtcgcgatggcggtgaacgaggagaacgcggccggtgggcgcatc
gtcacggcgccgacgaacggcgccgcggggatcgtcccagcggtgctgcactacgcgacg
cactacaccccactgggtccgagcgaccctgatgagacggccgtgtgcttcctgctcacg
gccggcgccatcggctcgctctacaaggaacgcgcgtcgatatccggtgcggaggtgggg
tgtcagggcgaggtcgggtcggcggcgtcgatggcggcggccgggctcgcggaggtgctc
ggcggcacgcccgcccaggtggagaacgccgccgagatcgccatggagcacagcctcgga
ctgacgtgcgacccgatcggcgggctcgtccagatcccctgcatcgagcgcaacgccatc
tccgcaggtaaggcggtcaacgccgcccggatggcgctgcgtggcgacggccgacaccgc
gtctcgctcgaccaggtcatcacgacgatgcgcgagacgggccgagacatgagcgacaag
tacaaggagacctcgcgcggcgggctggcgctcaccatcccggtgaacgtcgtcgagtgc
tga

KEGG   Pseudonocardia benzenivorans: Psed_5217
Entry
Psed_5217         CDS       T01479                                 
Name
(GenBank) threonine dehydratase
  KO
K01754  threonine dehydratase [EC:4.3.1.19]
Organism
pdx  Pseudonocardia benzenivorans
Pathway
pdx00260  Glycine, serine and threonine metabolism
pdx00290  Valine, leucine and isoleucine biosynthesis
pdx01100  Metabolic pathways
pdx01110  Biosynthesis of secondary metabolites
pdx01200  Carbon metabolism
pdx01230  Biosynthesis of amino acids
Module
pdx_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Psed_5217
   00290 Valine, leucine and isoleucine biosynthesis
    Psed_5217
Enzymes [BR:pdx01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.19  threonine ammonia-lyase
     Psed_5217
SSDB
Motif
Pfam: PALP Thr_dehydrat_C Hydrolase
Other DBs
NCBI-ProteinID: AEA27354
UniProt: F4CTC9
LinkDB
Position
5581522..5582757
AA seq 411 aa
MTAHDVDLAAERLRAVIGPSPLQISPRLSDAVGGEVWLKREDLQPVRSYKIRGAYNLIAQ
LSPEQRERGVVCASAGNHAQGVAFACARLGVKARVYLPRTTPRQKRDRVAKLGGKVVDVI
VVGNAYDDAAAAAALDAERNGATLVPAFDDARTVAGQGTVAREIMSQLGSEPDLVVVPVG
GGGLLAGMTTYLRERHPGVGIAGVEPAGAASMTAALAAGGPLPLTDLDPFVDGAAVRRVG
DTTFPIVRDADIPLTPVAEGRICMEMLALYQTDGIIAEPAGALAPAAIDALPIPRGSVTV
CILSGGNNDVSRYAEIVERALIHEGRKHYFLVDFPQEPGALRGFLDDVLGPDDDITLFEY
VKRNNRETGPALVGIELGRPEDLEGLLARMESAPPHIERIPPDSPQFRFLL
NT seq 1236 nt   +upstreamnt  +downstreamnt
gtgaccgctcatgacgtcgacctcgcggccgaacggctgcgcgcggtgatcggcccgagc
ccgctgcagatctcgccgcggctctccgacgccgtcggcggcgaggtctggctcaagcgc
gaggacctgcagcccgtgcggtcctacaagattcgcggtgcctacaacctgatcgcgcag
ctctcgccggagcagcgcgagcgcggcgtcgtctgcgcgagcgccggcaaccacgcgcag
ggcgtggcgttcgcctgcgccaggctcggggtcaaggcgcgggtctacctgccgcgcacc
acgccgcgccagaagcgcgaccgggtcgccaagctcggcggcaaggtggtcgacgtgatc
gtcgtcggcaacgcctacgacgacgccgccgcggccgccgccctcgacgccgagcgcaac
ggcgcgaccctcgtccccgcgttcgacgacgcccgcaccgtcgcggggcagggcaccgtc
gcgcgcgagatcatgagccagctcggcagcgagcccgacctggtcgtggtgcccgtcggc
ggcggggggctgctcgccggcatgacgacgtacctgcgcgaacggcaccccggcgtcggc
atcgccggcgtggagcccgcgggcgccgcgagcatgacggccgcgctcgccgccggcggt
ccgctgccgctcaccgacctcgaccccttcgtcgacggtgctgcggtccggcgcgtgggc
gacacgacctttccgatcgtccgcgacgccgacatccccttgacacccgtcgccgagggc
cgcatctgcatggagatgctcgcgctctaccagaccgacgggatcatcgccgagcccgcg
ggtgccctcgcgccggccgcgatcgacgcactgccgatcccccgcggctcggtgaccgtc
tgcatcctctccggcgggaacaacgacgtcagccgctacgccgagatcgtcgaacgcgcc
ctgatccacgagggccgcaagcactacttcctcgtcgacttcccccaggagccgggcgcg
ctgcgcggcttcctcgacgacgtcctcggccccgacgacgacatcacgctcttcgagtac
gtcaagcgcaacaacagggagaccggtccggcactcgtcgggatcgagctgggccgcccc
gaggacctcgaggggctgctcgcccgcatggagagcgcgcccccgcacatcgagcgcatc
ccgccggactccccgcagttccgcttcctgctctga

KEGG   Pseudonocardia benzenivorans: Psed_6229
Entry
Psed_6229         CDS       T01479                                 
Name
(GenBank) Pyridoxal-5'-phosphate-dependent protein beta subunit
  KO
K01754  threonine dehydratase [EC:4.3.1.19]
Organism
pdx  Pseudonocardia benzenivorans
Pathway
pdx00260  Glycine, serine and threonine metabolism
pdx00290  Valine, leucine and isoleucine biosynthesis
pdx01100  Metabolic pathways
pdx01110  Biosynthesis of secondary metabolites
pdx01200  Carbon metabolism
pdx01230  Biosynthesis of amino acids
Module
pdx_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Psed_6229
   00290 Valine, leucine and isoleucine biosynthesis
    Psed_6229
Enzymes [BR:pdx01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.19  threonine ammonia-lyase
     Psed_6229
SSDB
Motif
Pfam: PALP DUF1330
Other DBs
NCBI-ProteinID: AEA28330
UniProt: F4CNN2
LinkDB
Position
6589712..6590587
AA seq 291 aa
MSPSPADVAAAATRVAPHVRRTPLFATEVDGRPLLLKLEHLQRSGSFKMRGATNALLSGE
RPDRVVTASGGNHGLGVATAAARLGVPATVYVPESVPDAKARRIEAAGAKLVRHGDTYAE
AAAAARAEQGGRYLHAYDQPEVVAGQGTVAAEIVADAPDVDAVVVAAGGGGLAAGTSLAI
GGRRIVTVEPEHCRAVHAALTAGGPVDVGVDSVAASALGATRIGDLAFALLDAADTVPVL
VSDDEILAARDLLWDEFRLRVEPAAAAPFAAWLADRIPARNPCLVLCGAND
NT seq 876 nt   +upstreamnt  +downstreamnt
gtgagtccttctcccgccgacgtggccgccgccgcgacccgtgtcgccccgcacgtccgt
cgcacgccgctgttcgccaccgaggtcgacggccgcccgctgctgctcaagctcgagcac
ctgcagcgcagcggttcgttcaagatgcgcggcgcgacgaacgcgctgctgtcgggtgag
cgccccgaccgggtcgtgacggcgtcgggcggcaaccacgggctcggggtcgccaccgcg
gccgcccggctgggcgtccccgcgacggtctacgtgcccgagtccgtgcccgatgccaag
gcgcgacgcatcgaggcggcgggggcgaagctcgtccgccacggcgacacctacgccgag
gccgccgccgccgcgcgcgccgagcagggcggccgctacctgcacgcgtacgaccagccc
gaggtcgtcgccggccagggcaccgtcgccgcggagatcgtggccgacgcgcccgacgtc
gacgcggtcgtcgtcgccgcgggtggcggcgggctcgcggccgggacctcgctcgcgatc
ggcggtcggcgcatcgtcaccgtcgaacccgagcactgccgggcggtccacgcggcactc
accgccggggggcccgtcgacgtcggggtcgactcggtcgcggcgtcggcgctgggtgcg
acccggatcggcgatctcgcgttcgcgctgctcgacgcggccgacacggtcccggtactg
gtgtccgacgacgagatcctcgccgcgcgcgacctgctctgggacgagttccggctgcgc
gtcgaaccggccgccgccgcaccgttcgcggcgtggctggccgaccggatccctgcccgg
aacccgtgcctggtgctctgcggcgcgaacgactga

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