Pseudonocardia benzenivorans: Psed_0969
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Entry
Psed_0969 CDS
T01479
Name
(GenBank) DNA repair protein and transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pdx
Pseudonocardia benzenivorans
Pathway
pdx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Psed_0969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdx03000
]
Psed_0969
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_0969
Enzymes [BR:
pdx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Psed_0969
Transcription factors [BR:
pdx03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Psed_0969
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Psed_0969
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
Treh_trans_TtfA
DUF7437
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
AEA23221
UniProt:
F4CJ01
LinkDB
All DBs
Position
complement(1029182..1030726)
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AA seq
514 aa
AA seq
DB search
MSDSRRNGPGGTGTIDVVLLNQDLCYRAVTSRDARFDGQFVTAVRTTGIYCRPSCPATTP
LRRNVEFLTTAAAAQQRGYRACRRCLPDAVPGSPEWDCRADLAGRAMRLIGDGLVEREGV
PGLARALGYSERQLNRVLTAELGAGPLALARAHRAHTARLLVETTSLPMADVAFAAGFAS
VRQFNDTVRAVYAVPPRTLRADAARRGGERLTPVAGALVLRLPHRLPFDAEGLLDHLRHR
AIAGVEEVVGSCYRRTLRLPHGPATVALDLSAPPGARHVTATLRPVDPRDVGPAVARIRR
LLDLDADPVAVDIALAADPALAPSVGAVPGIRVAGTVDPVELVVRTVLGQQVSVSGARTA
ASRLVAELGEPLPEQWDGPGLLFPTAEALAERAADVVSGPARRTATLVGLASAIASGDLV
LDAGREPAALRADLLAQPGVGPWTAGYLAMRLLGDPDELLAEDLAVRRGAAALGLPSDIP
ALTAHAERWRPWRSYAATHLWRASVPAARTKETS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgattcccgccggaacgggccgggcgggactggcacgatcgacgtcgtgctcctc
aaccaggacctctgctaccgcgcggtgacctcgcgcgacgcgcggttcgacggccagttc
gtcaccgcggtgcggacgaccggaatctattgccgcccttcgtgtcccgcgacgaccccg
ttgcgccgcaacgtcgagttcctgacgacggccgccgccgcccagcagcgcggctaccgc
gcgtgccgacgctgcctgcccgatgccgtgcccggttcgccggagtgggactgccgtgcc
gatctcgccggccgagcgatgcggctgatcggcgacgggctcgtcgaacgggagggcgtg
cccgggctcgcgagggcgctcggctactcggagcgccagctcaaccgcgtcctgacggcc
gagctcggcgcgggcccgctcgcgctggcgagggcacaccgcgcgcacaccgcacgactt
ctcgtcgagacgacgagcctgcccatggccgacgtcgcgttcgccgcgggcttcgccagc
gtccggcagttcaacgacaccgtccgcgccgtctacgcggtgccgccgcggacgttgcgc
gcggacgcggcccgtcgcggcggcgagcggctcaccccggtcgcgggcgcgctggtgcta
cggctgccccaccgcctcccgttcgacgcggaggggttgctcgaccacctgcgccacagg
gcgatcgccggcgtggaggaggtcgtcggcagctgctaccggcgcacgctgcgactcccg
cacggtccggcgacggtggcgctcgacctgtcggcgccgcccggggcccggcacgtcacg
gcgacgctacggcccgtcgacccgcgtgacgtcggccccgccgtcgcacgcatccgcaga
ctgctggacctggacgccgacccggtcgccgtcgacatcgcactggccgccgatcccgcg
ctcgcgccgtcggtcggggccgtgccgggaatccgggtcgccggcacggtcgacccggtc
gagctcgtcgtgcggacggtcctgggccagcaggtgtcggtcagcggcgcccggacggcc
gcgtcgcgcctcgtcgcggagctcggcgagccgctcccggagcagtgggacggtccgggc
ctgctcttcccgacggcggaggcgctcgccgagcgcgcggccgacgtcgtgagcgggccg
gccaggcggacggcgacgctcgtcgggctggcctcggcgatcgcgagcggcgacctcgtg
ctcgacgcgggccgcgagcccgccgcgctgcgcgccgacctgctcgcgcagcccggggtg
ggcccgtggacggccggctacctggccatgcgtctgctcggcgaccccgacgagctgctc
gccgaggacctcgccgtccgtcgcggggccgccgcgctgggcctgccctcggacatcccc
gcgctgaccgcccacgccgaacggtggcggccctggcggtcctacgcggccacccacctc
tggcgggcatcggttcccgccgcccgcacgaaggagacgtcatga
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