Pseudonocardia dioxanivorans: Psed_1097
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Entry
Psed_1097 CDS
T01479
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03420
Nucleotide excision repair
pdx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psed_1097
03430 Mismatch repair
Psed_1097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_1097
Enzymes [BR:
pdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psed_1097
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psed_1097
MMR (mismatch excision repair)
Other MMR factors
Psed_1097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEA23348
UniProt:
F4CQU8
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All DBs
Position
1159572..1163246
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AA seq
1224 aa
AA seq
DB search
MSLSPASLAAALGLPPPTEEQAAVIAAPSRPALVVAGAGAGKTETMAARVVWLVATGQVL
PEQVLGLTFTRKAAQQLGQRVRSRLRRLAGSPLLDELDPTGVRRASVLAGEPTVSTYHAY
AGRLVAEHALRLPAEPAARLLTQTASWQLAHRVVSTWADDLEIDRVPATVTGYLLALAGE
IGEHLADPAAVRRLAHEMADALENAPRAKGQRAEPSQTYKRWITAQRMRAELLPLVEAFA
ARKRAERTIDFADQMAIAARVAHEHPEVGATERATYRAVLLDEYQDTGHAQRVLLRALFG
RIPGTPARDDDLSVTAVGDPCQSIYGWRGASAGNLARFRGDFPSGDAPADEYGLLTSFRN
PPEVLALANTVSEPLRTAPGAVAVGELRAGPTAAVGDVRAALLPDVDAEIAWMADAVAAQ
WRSADAEGRPAPTSAVLVRRRADMDPVAAALRARGLPVEVVGLGGLLDTPEVRDLVSALR
LVADPLAGPAAMRLLTGARFRLGVADLAALWARARELVPPMPGRGPGPLGPAELALGALP
GEQAEQAGIVDALDDPGPPEQYSPAGFDRIRRLGRDLMWLRARTSAPLTDLVADAERLLL
LDTETAARPGPVGRAHLDAFADVVAEFSAGAEVASLTALLDYLETAEQAEDGLAPGEIEV
TPDRVQVLTVHAAKGLEWEIVAVPHLVAQVFPGRKIGGDWLTSPAELPVPLRGDAADLPA
FDLPAGADRKECEAAVTAHQRALDDRRLVEERRLFYVALTRAERVLLLSGHRWGAVGDKP
REPSEFLVEVARAMPAAGGRVEIWADEIGEGASNPVADRQVTAQWPADPLGGRSADVHAG
AELVRSALRELARRRADTLAAAAAPGAQLDLLVLGSDAADVPVRDGRGWSGGAAAGTGPA
GSASDDEASGGIASAATAPGGEVSGGAASGAAASGTAQAGAAQAGGEQAGGRGRGGASDS
ATDPGAPDPEAAGRSRAQPQSGSRPDAPHAPDAPVLDPDDPEGWAADVDVLLAERAAAAQ
RPVVELPAHFSVSQLVELAADPDALAARLRRPLPLPPNPHARRGTAFHAWLEQRFGAAGL
LDLDELPGAADDGAAPDDVLEELQDAFLASEWADRRPVEVEVPFETVIAGIAVRGRMDAV
FQDPDGGWTVVDWKTGPPPDESRLGALAVQLAAYRLAWAALQGVDPSRVRAAFHYVRSRR
TLRPADLLDADGLRALLDGVPVRA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcagccccgcatcgctcgccgccgccctggggctgccgccgcccacggaggaa
caggccgccgtcatcgccgcgccgtcgcggcccgcgctcgtcgtcgccggagcgggcgcg
ggcaagaccgagacgatggcggcgcgggtcgtctggctggtggccaccggccaggtcctg
cccgaacaggtcctcggcctgacgttcacccgcaaggccgcccagcagctcggccagcgg
gtgcggtcgcggctgcgccggctcgccgggtccccgctgctcgacgagctcgacccgacc
ggggtgcggcgcgcgtccgtgctggccggcgagccgaccgtctcgacctaccacgcctac
gcgggccggctcgtcgccgaacacgcgctgcggttgcccgccgagcccgccgcccgcctg
ctcacccagaccgcctcgtggcagctcgcccaccgcgtcgtctccacctgggccgacgac
ctggagatcgaccgggtcccggcgaccgtcaccggctacctgctcgcgctcgcgggggag
atcggcgagcacctggccgatcccgcggccgtccgcaggctcgcgcacgagatggccgac
gcgctggagaacgcgccccgcgccaagggacagcgtgccgagccgtcgcagacctacaag
cggtggatcacggcgcagcggatgcgggcggagctgttgccgctggtcgaggcgttcgcc
gcgcgcaaacgggccgagcgcacgatcgacttcgccgaccagatggcgatcgcggcccgc
gtcgcgcacgagcatcccgaggtcggcgccaccgagcgggccacctaccgcgccgtcctg
ctcgacgagtaccaggacaccgggcacgcccagcgcgtcctgctgcgggcgctgttcggc
cgcatccccggcactcccgcgcgcgacgacgacctctccgtcaccgccgtcggcgacccg
tgccagtcgatctacggctggcgcggggcgagcgcgggcaacctcgcccggttccgtggc
gacttcccgtcgggcgacgcccccgccgacgagtacggcctgctcacgagcttccgcaac
ccgccggaggtgctcgccctggccaacacggtgtcggagccgctgcgcacggcacccggc
gcggtcgcggtgggcgagctgcgcgccggacccacggccgcggtcggcgacgtccgcgcc
gcgctgctgcccgacgtcgacgccgagatcgcctggatggccgacgcggtggccgcgcag
tggcggtcggccgatgccgagggacggccggcaccgacatcggccgtgctggtacgccgt
cgcgccgacatggacccggtcgcggcggccctgcgggcgcgcgggctgccggtcgaggtc
gtcgggctcggcgggctgctcgacacccccgaggtccgcgacctcgtcagtgcattgcgg
ctggtcgccgacccgctcgccgggcccgcggcgatgcggctgctcaccggggcaaggttc
cggctcggtgtcgccgacctggccgcgctgtgggcgcgggcccgcgagctcgtaccgccg
atgccggggcgcggcccggggccgctgggcccggccgagctcgcgctcggggcgttgccg
ggcgagcaggcggagcaggcgggcatcgtcgacgcgctcgacgaccccggcccgcccgag
cagtactccccggccgggttcgaccgcatccgccggctcggccgcgacctcatgtggctg
cgggcgcggacgtcggccccgctgaccgatctcgtcgccgacgccgagcggctgctgctg
ctcgacaccgagaccgccgcacgccccggcccggtcggtcgcgcgcacctcgacgccttc
gccgacgtcgtcgcggagttctccgcgggtgccgaggtcgcctcgctcaccgcgctgctc
gactacctcgagaccgccgagcaggccgaggacggcctcgccccgggcgagatcgaggtg
acacccgaccgcgtgcaggtgctcacggtgcacgccgccaaggggctggagtgggagatc
gtcgccgtgccgcacctggtcgcgcaggtcttccccgggcgcaagatcggtggcgactgg
ctcacctcgcccgccgagctccccgtcccgctgcgcggcgacgccgccgacctcccggcg
ttcgacctgccggcgggcgccgaccgcaaggagtgcgaggcagccgtcacggcccatcaa
cgggccctcgacgaccgacggctcgtcgaggagcgccggctgttctacgtcgcgctgacc
cgggccgagcgcgtgctgctgctctccgggcaccggtggggcgcggtcggggacaagccg
cgcgagccgtcggagttcctcgtcgaggtggcgcgggccatgcccgcggcaggggggcgc
gtcgagatctgggccgacgagatcggcgagggcgccagcaaccccgtcgccgaccggcag
gtcaccgcgcagtggcccgcggacccgctgggaggccggtcggccgacgtgcacgcgggc
gccgagctggtgcgttccgccctgcgcgagctcgcacggcgccgggccgacacgctcgct
gctgccgcggcccccggcgcgcagctcgacctgctcgtactcggttccgatgcggcggac
gtcccggtccgtgacgggcgcgggtggtcgggcggcgcggcggccggcacgggtccggcc
ggcagcgcttccgacgatgaggcgtccggcgggattgcgtcggctgcgaccgcgccgggc
ggcgaggtgtcgggcggcgcggcgtccggtgcggccgcgtccggcaccgcacaggccggc
gccgcacaggccggcggcgagcaggccggcggtcgtggtcgcgggggcgcgagcgacagt
gcaaccgaccccggggcacccgacccggaggcggcaggccggtcgcgggcacagccgcag
tccggctcccgcccggacgctccccacgcgcccgacgctcccgtcctcgatccggacgac
ccggagggctgggccgcagatgtcgacgtcctgctcgcggaacgcgccgcggccgcacag
cggccggtcgtggagctgcccgcgcacttctcggtcagccagctcgtggagctcgccgcc
gaccccgatgcgctggccgcccgcctgcgccgtcccctcccgctcccgcccaacccgcac
gcgcggcgcggcacggcgttccacgcctggctggagcagcggttcggcgcggccgggctc
ctcgacctcgacgagctccccggcgccgcggacgacggcgcggcccccgacgacgtgctc
gaggaactgcaggacgcgttcctcgcctcggagtgggccgaccgccgtccggtcgaggtc
gaggtgccgttcgagacggtgatcgccgggatcgcggtccgcggacggatggacgcggtg
ttccaggaccccgacggcggctggacggtcgtcgactggaagaccggtccgccgccggac
gagagccggctcggagcgctggccgtgcagctcgcggcctaccgactcgcatgggccgcg
ctgcaaggggttgatccgtcccgggtgcgggcggcgttccactacgtgcgctcgcgccgc
accctgcgcccggccgacctcctcgacgcggacggcctgcgcgccctgctcgacggcgtc
cccgtccgcgcctga
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