Pseudonocardia dioxanivorans: Psed_1667
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Entry
Psed_1667 CDS
T01479
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psed_1667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdx03021
]
Psed_1667
03019 Messenger RNA biogenesis [BR:
pdx03019
]
Psed_1667
Transcription machinery [BR:
pdx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Psed_1667
Messenger RNA biogenesis [BR:
pdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Psed_1667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AEA23903
UniProt:
F4CJ53
LinkDB
All DBs
Position
1756859..1759240
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AA seq
793 aa
AA seq
DB search
MSETDLVSTAAPAKRKGLSGMVLAELRQLAGELDIPGTAGMRKGDLIAAIKERQAGGPAS
PQLALGDGATDDTAGATSGSRPARGRGSAAAAADAPAVPAAESPAAAQASETATPETTAA
ETPAAGATAPVTEAPPAEKPVRTRRRAASRPAGAPARTPAVEAPSVAEAATGADAASVAE
APAAEAPAAGSTSAGSTSAGNSAAGSTAVGETAAVTEIAAITETAAAAEPARAAAPSADA
ADAEPETTGRRRQTRRRGGDQADGGQAADAGTDVRDRAAERTNGVERAGAGDGRGERRGR
DNDRRDRRDDDRRDDRRDNDRGDDRGGRNSQRGNDSRGNDSRAGDGRNNDGRNNDGRGND
QRGVDTRGNDSRDDDGDDDGDGRGRRGRRFRDRRRGRDRQGGGQGNVDTEVRDDDVLLPV
AGIVDILDNYAFVRTTGYLSGPNDVYVSLSMVRKYGLRRGDAITGAVRQPREGEQQRQKF
NPLVRVDTVNGRDPEAAKARPEFTKLTPLYPNERLRLETEPSKLTTRVIDLVMPVGKGQR
ALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLVDERPEEVTDMQRSVKGEVIASTFD
RPPSDHTAVAELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTA
LYPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKR
VFPAIDVDASGTRKEELLMSPDEFAVTVKLRRVLAALDDQQAIDLVLDRLRKTRTNIEFL
MTVAKSTPGPDND
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccgatctcgtcagcaccgccgcccccgccaagcgcaagggcctgtccgga
atggtgctggcggagctgcgccagctggcgggcgagctcgacatccccggcaccgccggg
atgcgcaagggcgatctgatcgccgccatcaaggagcgccaggccggcggccccgcgtcg
ccgcagctcgcgctcggcgacggcgcgaccgatgacacggccggcgccaccagtggctcg
cgccccgcacggggccgcgggtccgctgcggcggccgccgacgcgcccgccgtcccggcc
gcggagtcgcccgccgccgctcaggcctctgagaccgcgacccctgagactacggcggcc
gagacgccggctgccggagccactgcgccggtgaccgaggcgccgcccgccgagaagccg
gtgcgcacccgtcgccgggccgcgagccgtccggcgggggcgcccgcccggacgccggcc
gtcgaggccccgtcggtcgccgaggccgcgaccggcgcggatgcggcctccgtcgccgag
gccccggccgccgaggccccggccgccggaagcacctccgccgggagcacctccgcgggg
aacagcgccgccgggagcaccgctgtcggtgagaccgcggcggtcaccgagatcgcggcc
atcaccgagaccgctgccgccgctgagcccgcgcgtgccgccgctccgtcggccgacgcc
gccgacgccgagcccgagaccacgggccggcgccggcagacccgtcgccgtggcggcgac
caggccgacggcggccaggccgccgacgccggcacggacgtccgcgaccgcgccgccgag
cgcaccaacggcgtcgagcgcgccggggcgggcgacggccggggcgagcgccggggccgc
gacaacgaccggcgcgaccggcgcgacgacgaccggcgcgacgaccgtcgtgacaacgac
cgcggggacgaccgcggcgggcggaacagccagcgcggcaacgattcccggggcaacgac
tcgcgtgccggcgacggccgcaacaacgacggccgcaacaacgacggccgcggcaacgac
cagcgtggggtcgacacccgcggcaacgactcccgcgacgacgacggcgacgacgacggc
gacggccggggccgccgcggtcgccggttccgcgaccgccgccgcggccgggaccgccag
ggtggtggccagggcaacgtcgacaccgaggtgcgtgacgacgacgtcctgctgcccgtc
gccggcatcgtcgacatcctggacaactacgcgttcgtccggacgaccggatacctgtcg
gggccgaacgacgtctacgtgtcgctgtcgatggtgcgcaagtacggcctgcgccgtggt
gacgcgatcaccggtgcggtccggcagccgcgcgagggcgagcagcagcggcagaagttc
aacccgctggtgcgcgtcgacaccgtcaacggccgcgatcccgaggccgccaaggcgcgc
ccggagttcaccaagctcaccccgctctacccgaacgagcggctgcgcctggagaccgag
ccgtcgaagctgaccacccgcgtcatcgacctggtgatgccggtcggcaagggacagcgc
gccctcatcgtcagcccgccgaaggccggcaagacgatggtgctgcagtcgatcgccaac
gcgatcaccacgaacaaccccgaggtccacctcatggtcgtgctcgtcgacgagcggccg
gaggaggtcaccgacatgcagcggtcggtgaagggcgaggtcatcgcctccaccttcgac
cgcccgccgtcggaccacaccgccgtcgccgagctcgccatcgagcgggcgaagcgcctg
gtggagatgggccacgacgtcgtcgtgctgctcgactcgatcacccggctcggccgcgcc
tacaacctggccgcgcccgcgtcgggccggatcctctccggtggtgtcgactcgaccgcg
ctctacccgcccaagcggttcctgggcgcggcgcgcaacatcgaggacggcggctcgctc
acgatcttcgcgacggcgctggtcgagaccgggtcgacgatggacacggtgatcttcgag
gagttcaagggcaccggcaacgccgagctcaagctcgaccgcaagatcgccgacaagcgg
gtcttcccggccatcgacgtcgacgcctccggcacgcgcaaggaggagctgctgatgtcg
cccgacgagttcgcggtgaccgtcaagctccgccgggtgctcgccgcgctcgacgaccag
caggccatcgacctcgtcctcgaccggctccgcaagacgcgcaccaacatcgagttcctg
atgacggtggcgaagtcgacgccgggcccggacaacgactga
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