Pseudonocardia dioxanivorans: Psed_1993
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Entry
Psed_1993 CDS
T01479
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psed_1993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdx03019
]
Psed_1993
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_1993
Enzymes [BR:
pdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psed_1993
Messenger RNA biogenesis [BR:
pdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psed_1993
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psed_1993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Sox_N
Motif
Other DBs
NCBI-ProteinID:
AEA24221
UniProt:
F4CWW6
LinkDB
All DBs
Position
complement(2124586..2126691)
Genome browser
AA seq
701 aa
AA seq
DB search
MAPLTAPALRDRAEELLAGLAGPGARLREDQWTAIHALVAERRRALVVQRTGWGKSAVYF
VATGLLREQGAGPTVIVSPLLALMRNQIDAAARAGIHAATVNSANIDDWDATYAAIDAGE
VDVLLVSPERLNNPDFRDRVLPRLTASAGMLVVDEAHCVSDWGHDFRPDYRRLRNLIADL
PDGIPVLATTATANDRVVVDVTEQLGLSSGEPLVLRGTLDRDSLCLSVVQLATPAQRMGW
LASRLDELPGAGIVYTLTIQAAEEVAEFLRERGYAVASYTGKTDPEARLAAEADLLGNRV
KALVATSALGMGFDKPDLGFVVHLGAPASPVAYYQQIGRAGRALDHAEVVLLPGREDRDI
WNYFASLAFPPEPLVRQTLDVLSGSPLSTASIETRVDLSRTRLEMLLKVLDSDGAAKRVK
GGWVATGEPWFYDAERHQRIAAARKVEQQAMLDYIATDRCRLAFLRAQLDDPGAATDPPC
GRCDVCTGQVFSPEVDAAAAAAAAERIARPGVPLAPRKQWPSGMKEIGVALSGRIAAGEV
ADEGRVIGRLSDIGWGTRLRELLADEDRPVPADVLDAVVAVLNGWDWAQRPVGVVGIGSR
TRPHQLAQLARRIAEIGRLPLLGTLAPRGERPPARDNSAQRLAAVADAFDTASLPSLDGL
DGPVLLVDDLVDSGWTMTVAARAVRLAGAPSVLPFALAQAG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggctcccctcaccgcacccgccctgcgcgaccgcgccgaggagctcctcgcgggtctg
gccggccccggggcgcggctccgcgaggaccagtggacggcgatccacgcgctggtcgcc
gaacgcaggcgcgcgctcgtcgtgcagcgcacgggatggggcaagtcggcggtctacttc
gtggcgacgggtctgctgcgcgagcagggcgccggccccaccgtgatcgtctcccccctg
ctggccctgatgcgcaaccagatcgacgccgcggcgcgcgccggcatccacgcggcgacg
gtcaactccgccaacatcgacgactgggacgccacgtacgccgcgatcgacgcgggtgag
gtcgacgtgctgctcgtcagccccgagcggctcaacaaccccgacttccgcgaccgggtg
ctcccccggctcaccgcgagcgccgggatgctcgtcgtcgacgaggcgcactgcgtgtcg
gactgggggcacgacttccggcccgactaccggcgcctgcgcaacctgatcgccgacctg
cccgacggcatccccgtgctggccaccaccgccacggcgaacgaccgcgtcgtcgtcgac
gtcaccgaacagctcgggctgtcctcgggcgagcccctggtgctgcgcggcacgctcgac
cgcgacagcctgtgcctgtcggtggtgcagctggccacgcccgcgcagcggatgggttgg
ctcgcctcccggctcgacgagctgccgggcgcaggcatcgtctacacgctgacgatccag
gcggccgaggaggtcgccgagttcctgcgcgagcgcgggtacgccgtcgcctcctacacc
ggcaagaccgaccccgaggcccggctcgccgccgaggccgacctcctcggcaaccgcgtc
aaggcgctggtggcgacgtccgcgctcggcatggggttcgacaagcccgacctggggttc
gtcgtccacctcggcgccccggcgtcgccggtggcctactaccagcagatcggccgcgcc
ggccgcgcgctcgaccacgccgaggtcgtcctgctgccgggccgcgaggaccgcgacatc
tggaactacttcgcctccctcgccttcccgcccgagccgctggtccgccagaccctcgac
gtgctgtccggctcaccgctgtcgacggcgtcgatcgagacccgcgtcgacctctcgcgt
acccggctggagatgctgctcaaggtcctcgacagcgacggcgcggccaagcgggtcaag
ggcggctgggtcgccaccggtgagccctggttctacgacgccgagcgccaccagcggatc
gccgccgcccgcaaggtcgagcagcaggcgatgctcgactacatcgccaccgaccgttgc
cgcctcgcgttcctgcgcgcgcagctcgacgacccgggcgccgcgaccgatccaccgtgc
gggcgctgcgacgtctgcaccgggcaggtgttctcccccgaggtcgacgccgcggccgcg
gccgccgccgccgagcggatcgcccggcccggggtgccgctcgcgccgcgcaagcagtgg
cccagcgggatgaaggagatcggcgtcgcgctgtccggacggatcgccgcgggcgaggtc
gccgacgagggacgggtcatcggacggctctccgacatcgggtggggcacccggctgcgg
gagctgctcgccgacgaggaccggcccgtccccgccgacgtgctcgacgccgtcgtcgcc
gtgctcaacgggtgggactgggcgcagcggccggtcggggtcgtcggcatcgggtcgcgt
acacggccgcaccagctcgcgcagctggcccggcggatcgccgagatcggccggttgccg
ctgctggggacgctcgcgccgcgcggggagcggccgcccgcccgggacaactccgcgcag
cggctggccgcggtcgccgacgcgttcgacacggcgtcgctgccgtcgctcgacgggctc
gacggcccggtcctgctggtcgacgacctcgtcgacagcggctggacgatgacggtcgcc
gcccgggcggtacgcctggcgggcgccccgtcggtcctgccgttcgcgctggcgcaggcg
ggctga
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