Pseudonocardia dioxanivorans: Psed_3068
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Entry
Psed_3068 CDS
T01479
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psed_3068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdx03019
]
Psed_3068
03009 Ribosome biogenesis [BR:
pdx03009
]
Psed_3068
Enzymes [BR:
pdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psed_3068
Messenger RNA biogenesis [BR:
pdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psed_3068
Ribosome biogenesis [BR:
pdx03009
]
Prokaryotic type
rRNA helicases
Psed_3068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
MurB_C
B12-binding
Motif
Other DBs
NCBI-ProteinID:
AEA25267
UniProt:
F4CSW8
LinkDB
All DBs
Position
3271811..3273790
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AA seq
659 aa
AA seq
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MTTLLDLPENDHPETPEFDDAALAAEIDSVEDVAPTDASHDSDSDESIGDSVESTGDVDE
FADDSAEDSNDESDDSDDSDDTDDPDEGGVRFADLGLAPELQRALDELGYERPSPIQAEA
IPSLIDGRDLIGQAATGTGKTAAFALPMLQRLAQERRGSRGTAPLGLVLAPTRELAMQVT
EAIARYGKGLRARVLAVYGGAPIGPQLGALKRGVDVVVATPGRAIDLINRGALSLDELEV
VVLDEADEMLDMGFVEDIETILQATPDTRQAVLFSATMPRRIEVLARTYLTDPVLVRIQR
EEVPEGEAPRVRQTAYMVPRSHTTAALGRILELERPTAAIVFCRTRADVDAVTEALTGRG
LRAEALHGGMDQEHRTRVVDRLRNGRTDLLVATDVAARGLDIDQLTHVVNHDVPKSPESY
VHRIGRVGRAGREGVAITLVAPASVRHLRNIERLTGTPVPVAPVPTVADLAGARVERTKV
ALRERLLTDRQSAGRGADDGVAAMIASLAEEFDAVEVAAAAVRIARDVSGAPEDEIDIPV
VSAPREGRRERDGRGGPAGRREFGGSRGQGPRPPKAGTTRLFVSAGRAAGVRPQDIVGAL
ANESRLSGRDIGAIQIHERHALVEVPEHAADEVLRALRGVTTLKGRRANVRRDRATARP
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgactaccctgctcgacctgcccgagaacgaccaccccgagacccctgagttcgacgac
gccgcgctcgcggccgagatcgactcggtcgaggacgtcgccccgaccgacgcctcccac
gacagcgactccgacgagtccatcggcgactccgtcgagtccaccggcgacgtcgacgag
ttcgctgacgactccgccgaggactcgaacgacgagtccgacgactccgacgactccgac
gacacggacgaccccgacgagggcggcgtgcgcttcgccgacctcgggctggctcccgag
ctgcagcgcgcgctcgacgagctcggctacgagcggcccagcccgatccaggccgaggcc
atcccgtcactgatcgacggccgtgacctcatcggccaggccgccaccggcaccggcaag
acggcggccttcgcgctgccgatgctgcagcgcctggcgcaggagcgccgcggcagccgc
ggcaccgccccgctcggcctggtgctggccccgacccgcgagctcgcgatgcaggtcacc
gaggcgatcgcccgctacggcaaggggctgcgtgcccgggtgctggccgtctacggcggc
gctcccatcggcccgcagctcggtgcgctcaagcgtggcgtcgacgtcgtcgtcgccacc
ccgggccgcgcgatcgacctgatcaaccgcggtgccctgagcctcgacgagctcgaggtc
gtcgtgctcgacgaggccgacgagatgctcgacatgggcttcgtcgaggacatcgagacg
atcctgcaggccacccccgacacccggcaggccgtgctgttctcggccaccatgccgcgg
cgcatcgaggtgctcgcccgcacctacctgaccgacccggtgctggtgcgcatccagcgc
gaggaggtcccggagggcgaggccccccgggtccgccagaccgcctacatggtgccgcgc
agccacacgacggcggcgctgggccgcatcctcgagctggagcggccgaccgcggcgatc
gtgttctgccgcacccgtgccgacgtcgatgccgtcaccgaggcgctgaccggccgtggg
ctgcgtgccgaggcgctgcacggcggcatggaccaggagcaccgcacccgcgtcgtcgac
aggctgcgcaacgggcggaccgacctgctcgtcgccaccgacgtcgccgcccgcggcctc
gacatcgaccagctgacccacgtcgtcaaccacgacgtgcccaagtcgcccgagtcctac
gtgcaccgcatcggccgggtcggccgggcgggccgcgagggcgtggcgatcaccctggtc
gcgcccgcgtcggtgcggcacctgcgcaacatcgagcggctcaccggcacgccggtgccc
gtcgcccccgtgccgacggtggccgacctcgccggtgcgcgcgtcgagcggaccaaggtc
gcgctgcgggagcggctgctgaccgaccggcagtcggccggccgcggcgccgacgacggc
gtcgccgcgatgatcgcctcgctcgccgaggagttcgacgccgtcgaggtcgcggccgcc
gccgtgcggatcgcccgcgacgtctccggtgcccccgaggacgagatcgacatcccggtg
gtgtcggcgccgcgcgaaggccgtcgcgagcgcgacggccggggcggcccggccggacgg
cgcgagttcgggggcagccgcggccagggcccgcgtccgccgaaggcgggtaccacccgg
ctgttcgtctccgccggtcgtgccgcgggtgtgcgcccgcaggacatcgtcggcgcgctg
gccaacgagtcccggctctccggtcgcgacatcggcgccatccagatccacgagcggcac
gcgctcgtggaggtgcccgagcacgccgccgacgaggtgctgcgcgcgctgcgcggcgtc
accacgctcaagggccgccgcgccaacgtgcgccgcgaccgggcgacggcccgcccgtag
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