Pseudonocardia dioxanivorans: Psed_3147
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Entry
Psed_3147 CDS
T01479
Name
(GenBank) RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
pdx
Pseudonocardia dioxanivorans
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdx03021
]
Psed_3147
Transcription machinery [BR:
pdx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psed_3147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_3
HTH_Crp_2
Sigma70_ECF
HTH_24
HTH_31
DUF7343
GerE
MarR
KORA
MarR_2
HTH_IclR
HTH_AraC
LacI
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
AEA25343
UniProt:
F4CUF3
LinkDB
All DBs
Position
complement(3362401..3363267)
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AA seq
288 aa
AA seq
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MSDPADPAAAGDPEPAGVAAPGGPPGRAAGPGAEVPETGSSTYDHLAPLFDELAAMTADD
PRRTTLRERLVTGHLPVVRHIARRFAGRGEPVDDLEQAGTVGLINAVDRFDPARGVDFLS
YAVPTITGEVRRHFRDRTWSMRVPRRLKELQSSINSAVGGLAQELGRAPRPSEIADRIGR
DVDEVIEGLEARQVYRSTSLDELVADSDAMLSETLGIADAELEKVDYRQTLAPLLDELPT
RERTILVLRFFAGMTQTQIADEVGVSQMHVSRLLARTLARLRRRLGAG
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaccctgccgaccccgccgccgccggggatcccgagccggcgggcgtggcggcg
cccggcggcccaccgggccgcgcggcgggccccggtgccgaggtgcccgagaccgggagc
tcgacctacgaccacctcgcccccctgttcgacgagctcgccgccatgaccgccgacgac
ccacgccggacgacgctgcgcgagcggctcgtcaccgggcacctgcccgtcgtccggcac
atcgcgcgccggttcgcgggccgcggcgaacccgtggacgacctggagcaggccggcacc
gtcgggctgatcaacgccgtcgaccgcttcgaccccgcccgcggggtggacttcctgtcc
tatgccgtcccgacgatcaccggtgaggtccgcaggcacttccgcgaccgcacctggtcg
atgcgggtgccgcggcggctcaaggaactgcagagctcgatcaactccgccgtcgggggc
ctggcccaggagctcggccgggcgccgcgcccgtcggagatcgccgaccgcatcgggcgc
gacgtcgacgaggtgatcgagggcctcgaggcccgccaggtctaccgctccacctcgctc
gacgagctcgtcgccgactccgacgccatgctgtcggagacgctcggcatcgccgacgcg
gagctggagaaggtcgactaccggcagaccctcgcgcccctgctcgacgagctccccacc
cgcgaacgcaccatcctcgtcctgcggttcttcgcgggcatgacccagacccagatcgcc
gacgaggtcggggtctcccagatgcacgtctcccggttgctggcacggacgctggcccgg
ctgcgccgccggctgggcgccggctga
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