Pseudonocardia dioxanivorans: Psed_3150
Help
Entry
Psed_3150 CDS
T01479
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psed_3150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdx03019
]
Psed_3150
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_3150
Enzymes [BR:
pdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psed_3150
Messenger RNA biogenesis [BR:
pdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psed_3150
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psed_3150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
SaeA_1st
HHH
Motif
Other DBs
NCBI-ProteinID:
AEA25346
UniProt:
F4CUF6
LinkDB
All DBs
Position
complement(3366535..3368355)
Genome browser
AA seq
606 aa
AA seq
DB search
MAPRDPAQVLHQVFGYEDFRGDQREIVEHVSGGGDALVLMPTGGGKSLCYQIPALVRDGT
GVVISPLIALMQDQVDALRALGVRAGFLNSTQGPQERRDTERAFLDGELDLLYLAPERLR
VASTADLLDRGRIALFAIDEAHCVSQWGHDFRPDYLALSELHRRWPDVPRIALTATATRA
THTEIAERLDLTDARHFVASFDRPNIQYRIVPKAEERRQLLELLRAEHAGDAGIVYCLSR
RKVEQVAEFLTAQGITALPYHAGLEAPVRAANQARFLREDGVVMVATIAFGMGIDKPDVR
FVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLGDVVQQRKMIDESEGDLAHRRRLT
QHLDAMLALCETVECRRVNLLAYFGQAGEPCGNCDTCLTPPQTWDGTVAAQKVLSTVWRL
KKERNQSFGAGHVVDILLGKQSPKISQHRHDELSVFGVGSDLRDSEWRAVIRQLLARELL
AVGGAYQTLALTETSGEVLRGERTVALRRDPERAARASRSRSASAAVALPAEAAGLFERL
RAWRGAAAKEQGVPAYVIFHDATLREIATGAPATLAELGRVNGVGEAKLARYGEQILETL
AAAGPA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggctccccgggatcccgcgcaggtgctccatcaggtcttcggttacgaggacttccgc
ggggaccagcgcgagatcgtcgagcacgtcagcggcggcggcgacgcgctcgtgctcatg
cccaccggcggcggcaagtcgctgtgctatcagatccccgcgctggtacgcgacggcacg
ggtgtggtgatctcgccgttgatcgctctcatgcaggaccaggtcgacgcgctgcgggcg
ctcggcgtgcgggccgggttcctgaactccacgcagggcccgcaggagcgccgcgacacc
gagcgggcgttcctcgacggcgagctcgacctgctctacctggcgccggagcggctgcgg
gtggcctcgacggccgacctgctcgaccgagggcgcatcgcgctgttcgcgatcgacgag
gcgcactgcgtctcccagtggggccacgacttccggcccgactacctcgcgctgtccgag
ctgcaccggcgctggcccgacgtgccgcgcatcgccctcaccgccaccgcgacccgcgcg
acgcacaccgagatcgccgaacggctcgacctcaccgacgccaggcacttcgtcgcgagc
ttcgaccggcccaacatccagtaccggatcgtgcccaaggccgaggaacgccgccagctg
ctggagctgctgcgcgccgagcacgcgggcgacgccggcatcgtctactgcctgtcgcgg
cgcaaggtcgagcaggtcgcggagttcctcaccgcgcaggggatcacggcgctgccctac
cacgcggggctggaggcgccggtccgcgcggccaaccaggcgcggttcctgcgcgaggac
ggcgtcgtcatggtcgcgacgatcgcgttcggcatgggcatcgacaagcccgacgtgcgg
ttcgtcgcccacctcgacctccccaagtccgtcgagggctactaccaggagaccggccgc
gcgggccgcgacgggctgccgtcgacggcgtggctggcctacgggctgggcgacgtcgtg
cagcagcgcaagatgatcgacgagtccgagggcgacctggcgcaccgccgccggctcacc
cagcacctcgacgcgatgctcgccctgtgcgagacggtcgagtgccggcgggtgaacctg
ctcgcctacttcggccaggccggcgagccctgcggcaactgcgacacctgcctgacccca
ccgcagacgtgggacggcaccgtcgccgcgcagaaggtgctctcgacggtgtggcggctg
aagaaggagcgcaaccagagcttcggcgccgggcacgtcgtcgacatcctgctcggcaag
cagagcccgaagatcagccagcaccgccacgacgagctgtcggtcttcggggtcgggtcc
gacctgcgcgacagcgagtggcgcgcggtgatccggcagctgctggcccgcgagctgctc
gcggtcggcggcgcgtaccagacgctcgcgctcaccgagaccagcggcgaggtgctgcgc
ggcgagcgcacggtcgcactgcgccgcgatcccgaacgcgcggcgcgggcctcgcgcagc
aggtccgcgagcgccgcggtcgccctgccggccgaggcggccgggctgttcgagcggctg
cgcgcctggcgcggcgcggccgcgaaggagcagggcgtccccgcctacgtgatcttccac
gacgcgacgctccgcgagatcgccaccggcgcccccgcgacgctcgccgagctcggccgg
gtcaacggcgtcggcgaggccaagctcgcccgctacggcgagcagatcctcgagacgctc
gccgccgcgggtccggcgtag
DBGET
integrated database retrieval system
