Pseudonocardia dioxanivorans: Psed_3478
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Entry
Psed_3478 CDS
T01479
Name
(GenBank) RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
pdx
Pseudonocardia dioxanivorans
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdx03021
]
Psed_3478
Transcription machinery [BR:
pdx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psed_3478
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
DUF134
HTH_23
Sigma70_ECF
HTH_Crp_2
GerE
DUF7343
MarR
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AEA25660
UniProt:
F4CZC9
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All DBs
Position
3723281..3724171
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AA seq
296 aa
AA seq
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MNEYSHLSPLFTELACLPKGHRRRSRLRDRLIIEHLPLARHIAKRFSQRGEPLQDLEQVA
VLGLINAVDRFDPARGPEFLAFAIPTITGEVLRWFRDRAWTIRVPRRLKELDMSISTAAD
RLTQELGRAPTPSEIAARLDVALSDVVESIQAREAYRCVSLDVPLSTESEDESVHNGILA
RTDPGVALVEDREVLSPLVDALTEREQRIVLLRFFEDMTQNEIGQEIGISQMHVSRVLTA
ALERLRQALTADTRGVRATAGTARTPGPGARSTGLSVAGQRCGGNAPRRRERRAPR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgagtactcacatctcagcccgctgttcacggaactggcctgcctacccaaaggt
catcgccgccggtcccggcttcgggatcggctgatcatcgagcatctgccgctggcccgg
cacatcgccaagcgcttcagccagcgaggcgagccgctgcaggacctcgagcaggtggcc
gtcctcggcctgatcaacgcggtggaccggttcgatcccgcccgcggtcccgagttcctg
gccttcgccatacccacgatcaccggtgaagtgctgcgctggttccgcgaccgcgcctgg
acgatacgggtaccgcggcggctgaaggagctggacatgtccatcagcaccgccgccgac
cggctgacgcaggaactcggccgagctcccacaccgagcgagatcgcggccaggctcgat
gtcgcgctgtcggacgtcgtcgaaagcatccaggcgcgggaagcctatcgctgcgtgtcg
ctcgatgtcccgctcagcacggagtccgaggacgagtccgtccacaatgggatcctcgcc
aggaccgatcccggcgtggcactcgtcgaggaccgggaggtactcagcccgctggtcgac
gcgctgaccgagcgggagcagaggatcgtgctactacgcttcttcgaggacatgacacag
aacgagatcggtcaggagatcggcatctcccagatgcacgtgtcccgggtgctgaccgcg
gccctggaacgactgcggcaggcgctgaccgccgatacccggggcgtccgagcaacagcc
gggacagctcgaacgccaggtcccggtgcccgctcgacgggtttgtcagtcgcgggtcaa
cgatgcggaggaaacgcgccacggcgacgcgaacgccgcgcaccccgctga
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