Pseudonocardia dioxanivorans: Psed_6213
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Entry
Psed_6213 CDS
T01479
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pdx
Pseudonocardia dioxanivorans
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdx03016
]
Psed_6213
Enzymes [BR:
pdx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Psed_6213
Transfer RNA biogenesis [BR:
pdx03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Psed_6213
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AEA28314
UniProt:
F4CNL6
LinkDB
All DBs
Position
complement(6574641..6575201)
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AA seq
186 aa
AA seq
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MRLFVALWPSADTVATLDAALGPARAGHPALRWVAPERWHVTLAFLGEVADDRRDDLEER
LGRAARRAAPLRPVVDGAGRFGDRTLWARVAGDRDRLRRLAQASAAAARRARIPVDAKAF
RPHLTLATARPPRSVRPAAAELDPVLRNGPEDVVDRMCLVRSDLGQGPNRTPRYETVSEW
LLGGAR
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
gtgcggctcttcgtggcgctctggccctccgccgacaccgtggccacgctcgacgccgcg
ctcggaccggcgcgggccggtcaccccgcgctgcgctgggtggcccccgagcgctggcac
gtcacgctcgcgttcctcggcgaggtcgccgacgaccgtcgcgacgacctggaggaacgg
ctgggccgggccgcccggcgtgccgcgccgctgcggccggtcgtcgacggggcgggccgg
ttcggcgaccggacgctgtgggcgcgcgtcgccggtgaccgcgaccggttgcgccgcctg
gcccaggcgtcggccgcggcggctcgccgcgcccggatcccggtggacgccaaggccttc
cgcccgcacctcacgctcgcgaccgcgcgcccgccccggtcggtccggccggcggccgcg
gagttggacccggtgctgcgcaacgggcccgaggacgtcgtcgaccggatgtgcctggtg
cgcagcgacctcgggcagggcccgaacagaacgcctcgttacgagacggtgtccgagtgg
cttctcggcggtgcacgatag
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