Paenibacillus dendritiformis: QJQ58_04895
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Entry
QJQ58_04895 CDS
T09074
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QJQ58_04895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdy03400
]
QJQ58_04895
Enzymes [BR:
pdy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
QJQ58_04895
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
QJQ58_04895
DNA repair and recombination proteins [BR:
pdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QJQ58_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_TFIIB
DZR
Ribosomal_S13
Zn_ribbon_6
DUF7573
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
WGU95612
LinkDB
All DBs
Position
1074826..1075671
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AA seq
281 aa
AA seq
DB search
MPGIPEIEGYRKRLDQHTVGQRIRSLDMQRQSGLNVDLERLHDLALGRQILFVERRGTDL
IFHLDNGQRLVLRLGQEDELHIDRLEAGAEDEELKTAANASKPAFSLRLDSVAVTVVKSR
SLQLLLLTAKELDQQQREQGPDPLSRHLTAERFRQRFAKRRSTLKAALMNPALLAGIDSR
YADDIAFAAGLRPSVRVDKLQEEELDRLYLSMIHVLQEAIERQDGSGAAADGSTASLSWG
IAGKTGEPCPRCGTPIEEMLIQRKPAYFCPQCQPLPPADES
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgccgggaattcccgagatcgaaggttaccggaaacggctggatcagcatacggtaggc
cagcggatccgcagcttggatatgcagcgccaatccgggctgaacgtggacttagaacgt
ttgcacgatctggctcttggccgacaaattttatttgtggaacgaagaggaacggatctt
atttttcatctggataatggtcagcgtctggtgcttcggttgggccaggaggatgagctt
catattgacaggcttgaagccggtgcggaggatgaggaactgaaaacggccgcaaacgcg
agcaagcctgcattttcgctccgcttggacagcgtggcggtgaccgtggtcaagtcgcga
tcgctccagctattgctgctgacggcgaaggaactggatcaacagcagcgggagcagggt
cctgatccgttgtcccgccacttgacggcggaacggttccgccaacggttcgcgaagcgg
cggtcgaccttgaaggcggctttgatgaatcctgcgctgctggccggaattgacagccgg
tatgcggatgacatcgcgtttgctgccggacttcgcccttctgtgagggttgataagctg
caggaagaagagcttgaccggttgtatttatccatgattcatgtgcttcaggaagcgatc
gagcggcaggatgggagcggagcggcagctgatggcagcacggcttcactctcgtgggga
atcgcaggcaagacaggggagccttgcccgcgctgcggcacgccgattgaagaaatgctg
atccaacggaagcctgcgtatttctgtccgcagtgccagccgctgccgccagcggatgaa
tcctag
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