Paenibacillus dendritiformis: QJQ58_11070
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Entry
QJQ58_11070 CDS
T09074
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJQ58_11070 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdy03019
]
QJQ58_11070 (rny)
Messenger RNA biogenesis [BR:
pdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QJQ58_11070 (rny)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
MG280
ATP-synt_B
KH_2
Motif
Other DBs
NCBI-ProteinID:
WGU96739
LinkDB
All DBs
Position
complement(2391741..2393288)
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AA seq
515 aa
AA seq
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MEMNIWLALALVVAALILGFGIGYLIRKSLAEAKITSAEHAAEQIMDSARKEAEALKKET
VLEAKDDIHKLRTEAEKDIRERRNEVQRLERRVVQKEESLDKKLESLERKEEQVATKEKR
IEETQQQVERTLQQQVTELERISNLTMEDARSIILSNVEQEVRHETAQMIKDIEQQAREE
ADKRSREIITLAIQRCAADHVAETTVSVVALPNEEMKGRIIGREGRNIRALETLTGIDLI
IDDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQ
ATFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDVTLARRAG
LLHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVAAADA
LSAARPGARRETLETYIKRLEKLEDISESFEGVEKSYAIQAGREVRVMVQPDKIDDAEAY
RLAREITKKIESELDYPGHIKVTVIRETRAVEYAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaacatttggctcgcgctcgctctcgttgtggccgcattgatcttggggttt
ggaatcgggtacctgattcgcaaatcgcttgctgaagcgaagataacgagtgccgagcat
gccgcagagcagattatggacagcgcgcgcaaggaagcagaggcactgaagaaagaaacg
gtgctcgaagcgaaggacgacatccataaactgcgcaccgaagcggagaaagacattcgc
gagcgacgaaatgaagttcaacgtctggaaagacgcgttgtacaaaaagaagagtcattg
gataaaaagctggagtcgctggagcgcaaagaagaacaagtcgctaccaaagagaagcgc
atcgaagagacccagcagcaggttgaacggacgctgcagcagcaagttacggagttggaa
cggatctcgaatctgacgatggaagatgcgcggagcatcatcctctccaatgtggagcag
gaggtgcggcacgagactgcgcagatgatcaaggatatcgagcagcaggcacgcgaagaa
gcggacaagcgctcacgcgagattattacgcttgctatccagcgctgtgccgccgaccat
gtagcagagacgacggtctctgtcgtggcattgcctaatgaagagatgaagggccggatt
atcggccgcgaaggccggaatatccgtgcgcttgagacactgacaggaatcgatctgatt
atcgacgatacgccggaagcggtgattctgtccggatttgatccgatacgacgggagatc
gcgcggacggcattggagaaactggtcgccgatgggcgtatccacccggctcgaatcgag
gaaatggtggagaagtcccgcaaggaagtcgacgagcggattcgcgaatacggagaacaa
gcgacgttcgaggtcggagtgcatggcttgcatccggatctgatcaagattctgggacgt
ctgaagttccgtacgagctacggtcagaatgtgctcaagcattccatggaagtggcatat
ctcacaggcttgatggcgggagagctgggcgaagatgtaaccttggcacgccgtgccggg
ctgttgcatgatatcggaaaagcgctggatcacgaggtggaaggatcccacgtcgagatt
ggcgtagagttggcgaaaaagtataaagaacaccctgtagtcattaacagcatcgcatcc
catcacggggattgcgaagcgacatcggttatcgcaatgctggtggcagcggcggatgcg
ctgtctgcagccagaccgggagcgcgtcgtgagacgctcgaaacctatatcaagcggctg
gagaagctggaagacatttccgagtcgttcgaaggggtggagaaatcgtacgccatccag
gctggacgcgaagttcgcgtcatggtccagccggataagattgacgatgcggaagcgtac
cgactcgctcgggagattacgaagaaaatcgagagcgagctggactatccgggtcatatc
aaggtaacggtaatccgcgagacccgtgcggtagaatatgcgaaataa
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