Paenibacillus dendritiformis: QJQ58_11160
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Entry
QJQ58_11160 CDS
T09074
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJQ58_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdy03019
]
QJQ58_11160
Messenger RNA biogenesis [BR:
pdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QJQ58_11160
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WGU96757
LinkDB
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Position
complement(2411466..2413142)
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AA seq
558 aa
AA seq
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MSKKNTADKLSIFALGGVGEIGKNMYVVQYGNDIVVIDAGLKFPEEDMLGIDIVIPDISY
LTDNRDKVRGILITHGHEDHIGGLPYVLKHLNVPVYGTRLTLGLIESKLREANLLGETKR
VLITADSEVQLGSIRATFFKTNHSIPDSVGVCLETPEGNVVHTGDFKFDHTPVNGQYADL
QRMAEIGSKGVLALLSDSTNAERPGYTPSESSVGIVLEEIFRSAQQRVVVATFASNIHRI
QQVIEAAHATNRKLTVVGRSMVNVVTIASELGYLYIPDGMLIEPDEVNKMAADRVVILST
GSQGEPMSALTRMARSTHRKVDILPGDTVVIAATPIPGNEKYVGRTIDELSRLGAHVIYS
GMRAGVHVSGHGSQEELKLMLNLMRPKYFIPIHGEYRMLRHHAHLAESVGIEKENIFITD
IGDTVEIQNGVARRGSKVQSGYVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQD
GTILSGPDIISRGFVYVRESEGLLDEANRIVTSTLHKLMNENVNEWASLKTNVKDALGRF
LYEQTRRRPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgaagaaaaacaccgctgataaattatctatcttcgcattgggcggcgtgggcgaa
atcgggaaaaatatgtacgtcgtccaatacggaaacgatatcgtcgtcatcgatgcaggg
ttgaagttcccggaagaagatatgctcggaattgatattgtcattccggatatttcatat
ttgaccgataatcgtgacaaagtaagaggaatcctcattacgcacggacatgaagatcac
atcggtggtcttccctatgtactgaagcatttgaatgtgccagtgtacggcacacgcttg
acgttgggcttgattgagagcaagctgcgtgaagccaatctgctgggcgagacgaagcgc
gtcctgattacggcagattccgaagtgcagctcgggtcgatccgggcgactttcttcaag
acgaaccactcgataccggattcggtgggggtatgtctggagacaccggaaggcaatgtc
gtccatacgggcgatttcaagttcgatcatacgccggttaacgggcaatatgccgatctg
cagcgcatggctgaaatcggcagcaagggcgtgcttgccctgttgtctgacagcacgaat
gcggagcgtccaggctatacgccttccgagagcagcgtcggcattgtgctggaggaaatt
ttccgcagtgcacaacagcgcgtcgtggttgcgacgttcgcttccaacattcaccggata
cagcaggtgattgaggcagcccatgcgacgaaccggaagctaacggtggtagggcgcagc
atggtcaatgtcgttacgatcgcttcagaactcggatatttatatattccggacggcatg
ctgattgaaccggatgaagtgaacaagatggctgctgaccgggtagtcattctgtccacc
ggctcccagggtgagccgatgtcagctctgacgcggatggcgcgttcgacgcaccgcaag
gttgatattttgcctggagacacggtcgttatcgccgctactccgattccggggaatgag
aagtatgtcggacgaactatcgatgagttatcccgcttgggtgcgcatgttatctatagc
ggcatgagagccggcgtgcacgtatccggacacggcagccaggaagagctcaagctgatg
ctcaacctgatgcggcctaaatatttcattccgattcacggcgagtaccggatgctgaga
catcacgctcacctcgcggagtcggtcggaattgagaaggaaaacattttcattacggac
atcggagataccgtcgagattcagaatggcgttgcccggcgcggatcgaaggtacaatcg
ggctacgtgctcattgacggactcggcgtcggcgatgtcggcaatatcgtattgcgcgat
cgcaaattgttgtctcaagacggcattctggtcgtcgttgtcactttgagcaagcaggat
ggaacgattctgtctggtccagatatcatttcgcgcggattcgtctatgtccgtgaatcg
gaaggtcttctggatgaagccaatcgcattgtcacttcgacgcttcataagctgatgaac
gagaatgtgaatgagtgggcttcgctcaagacgaatgtgaaggatgcgctgggccggttc
ctgtatgagcagacccgccgccgtccgatgattctgcctattattatggaagtctaa
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