Paenibacillus dendritiformis: QJQ58_11510
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Entry
QJQ58_11510 CDS
T09074
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdy
Paenibacillus dendritiformis
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdy03032
]
QJQ58_11510 (topA)
03400 DNA repair and recombination proteins [BR:
pdy03400
]
QJQ58_11510 (topA)
Enzymes [BR:
pdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
QJQ58_11510 (topA)
DNA replication proteins [BR:
pdy03032
]
Prokaryotic type
DNA Topoisomerases
QJQ58_11510 (topA)
DNA repair and recombination proteins [BR:
pdy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QJQ58_11510 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_3
LAMB1
Toprim_2
IBR_1
Motif
Other DBs
NCBI-ProteinID:
WGU96822
LinkDB
All DBs
Position
complement(2482937..2485027)
Genome browser
AA seq
696 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEIEQDFAPKYITIRGK
GSVLKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDETEACRVVFNEITKQAVKD
AFKTPRQINMDLVHAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVSVKLIIDREN
EIDAFIPEEYWTITAKLEVGKSKFEAKFYGMNGVKKELSNETEVNEVLAALQKQAFVVSE
VKEKERLRHPSAPFTTSSLQQEAARKLNFRAAKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRISPTAQEEAKEYIGSQFGAEYVPETPRQYVKKAANAQDAHEAIRPTSVLRSPDQM
KPFLSRDQHRLYKLVWERFVASQMTSAIMDTMTVDLQAGEVTFRANGSKVRFPGFMKVYV
EGNDDGTVEDDKLLPPLKPGDKLKQEAIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFVPTELGELVIQLMEEFFPEILDAEFTAHMEEDLDHVEEG
QQDWVKVLSDFYESFEKRLQVAEEEMKEVEIEDEVSDEICEKCGRHFVYKMGRFGKFLAC
SGFPDCRNTRPIVKDTGVACPKCKEGKLVERRSKKGRVFYGCDRYPDCDYVMWDRPSVKP
CPSCGSLMVEKRSKQGTKLQCTQCDHNEMMQDNEDD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcattagtcattgtcgagtcgcctgcgaaggcgaagacaatcggaaaatat
ttaggcagcaaatatatcgtcaaagcgtctatggggcatgtgcgtgatttgcccaagagc
cagatcggcgttgaaatagagcaagatttcgccccgaagtacatcacgattcgcggcaag
ggcagcgtgctcaaagaattgaaagatgcaagaaagaaagtgaaaaaagtgtacctcgcg
gctgaccccgaccgcgaaggagaagcgatcgcttggcatctggcgcatgcgctcgaactg
gatgagacggaagcctgccgcgttgtattcaatgagattacgaagcaggccgtgaaggat
gcgttcaaaacgcctcgtcaaatcaatatggaccttgttcatgcccagcaagcgcgacgc
attctcgaccggttggtcggatacaagatcagccctcttttgtggaagaaggtgaagaaa
gggttgtctgcgggtcgggtacagtcggtatccgtgaagctgattatcgatcgggagaat
gagatcgacgcctttattcctgaggaatactggacgataaccgccaagcttgaagtaggc
aagtccaagttcgaagccaagttctacggcatgaatggcgtgaagaaggaactgtcgaac
gagaccgaagttaatgaagtgctggccgcgctgcagaagcaggcctttgtcgtctctgag
gtgaaggagaaggagcggcttcgccatccgtccgctccctttacgacgagctcgctgcag
caggaagcggcgaggaagctgaacttccgcgcggccaagacgatgtccgttgcgcagcag
ctgtatgaaggggtagacctgggcaaggaaggcacggtcggtctcattacctatatgcgt
acagactcgacgcggatatcgccgacggctcaggaggaagccaaggaatatatcggctcc
cagttcggagcggaatatgtgccggagacgccgcggcaatatgtcaaaaaggccgcgaat
gcgcaggatgcgcacgaggcgattcgccctacgtccgtcttgcgcagtccggatcagatg
aagccgttcctcagccgcgatcagcatcgcctctacaagctcgtatgggaacggttcgta
gcgagccagatgacgtccgctattatggatacgatgacggtcgatctgcaggcgggagag
gttacgttccgcgccaatggctccaaggtgcgctttcccgggttcatgaaggtttatgtc
gaagggaacgacgacggtacggtcgaggatgacaaattactccctccgctcaagccgggc
gacaagctgaagcaggaagcgatcgaaccgaagcagcatttcacccagccgccgccgcgg
tataccgaggcgagactggtgaaaacgctggaggagcttggcatcggaagaccgagcacg
tatgcgccgacgctggagacgatccagaagcgcggctatgtagcgatcgaggagaagaaa
ttcgttccgaccgagctgggcgaactggtcatccagctgatggaggagtttttccctgag
attctggacgctgaattcaccgcgcatatggaggaagatctcgaccatgtggaagagggg
cagcaggactgggtgaaggtgctcagcgatttctatgaatcgttcgagaagcggcttcag
gttgccgaggaagaaatgaaggaagtcgaaatcgaggacgaagtgtccgatgaaatatgc
gagaagtgcggacgccattttgtgtacaagatgggccggttcggcaaattcctcgcctgc
tccggatttccggattgccggaatacgcgtccgattgtgaaggatacgggcgtagcctgt
ccgaagtgcaaggaaggcaagctggttgagcgccgcagcaagaagggacgcgtcttttac
ggctgcgatcgttatccggactgcgattatgtgatgtgggaccggccatcggtcaagcca
tgtccgtcctgcggcagcttaatggtcgagaagcggagcaagcaaggaacgaagctgcag
tgcacgcagtgcgaccataatgaaatgatgcaggacaacgaggatgattaa
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