Paenibacillus dendritiformis: QJQ58_12895
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Entry
QJQ58_12895 CDS
T09074
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QJQ58_12895 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdy03021
]
QJQ58_12895 (rpoD)
Transcription machinery [BR:
pdy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QJQ58_12895 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WGU97078
LinkDB
All DBs
Position
complement(2818551..2819675)
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AA seq
374 aa
AA seq
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MANDQHTGLETETALEHAKDQLIELGKKRGSLSYKEIAEKMATFDQDPEQMDEFYEQLSD
LGIEVSEADDEMGVRANDRENDDSDDFHFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSA
EEEIELAKRIEQGDSEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREP
TPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYE
LLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaacatactggacttgaaacggaaacggcgctggaacatgcgaaggac
cagttgattgaactcggcaaaaagcgaggatcgctcagctacaaagagatagccgagaaa
atggcgacgttcgaccaagacccggaacaaatggatgagttctatgagcagctctccgat
ctgggtattgaagtaagtgaagccgatgatgagatgggcgttcgtgccaacgaccgcgag
aacgatgattcggacgattttcattttgatgatgatctgtcactgccgccgggcatcaaa
atcaatgacccggtgcggatgtaccttaaagagatcggccgtgttccgctcttgtcagca
gaagaggaaattgaacttgcgaagcggatcgagcagggcgattcggaagcgaagaagcgc
ttgaccgaggccaatctgcggttggtcgtcagcattgccaagcgttatgtcgggcggggc
atgctgttccttgatctgatccaagaaggaaatatggggcttatcaaagcggtggagaaa
ttcgaccacagcaaaggatataaattcagcacctatgcgacttggtggattcgccaagcg
attacgcgggccatcgcggatcaggcgcggacgatccggattccggttcatatggtcgag
acgatcaacaagctggttcgcgtatctcgtcaactgcttcaggagctgggacgcgaaccg
acgccggaagagattgcggccgagatggaattgagcgtagagaaggtgcgcgagattatg
aagattgcacaggagccggtctccttggagacgccaatcggcgaagaggacgactcgcat
ctgggcgatttcatcgaggatcaggaggcgctggctccggcggacgccgccgcgtacgag
ctgctgaaggagcagttggaggatgtgcttgacacgctgaccgagcgtgaggagaacgtg
cttcgcctgcgcttcggtctggacgacggccggacgagaacgctggaagaagtgggcaaa
gtatttggcgttacgcgcgagcggattcgtcaaatcgaggcgaaggctctccgcaagctg
cgccatccaagccgcagcaagcggttaaaagatttcttagaataa
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