Paenibacillus dendritiformis: QJQ58_22525
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Entry
QJQ58_22525 CDS
T09074
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QJQ58_22525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdy03400
]
QJQ58_22525 (mfd)
Enzymes [BR:
pdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QJQ58_22525 (mfd)
DNA repair and recombination proteins [BR:
pdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QJQ58_22525 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
SVIP
AAA_22
SecA_DEAD
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WGU93288
LinkDB
All DBs
Position
complement(5023071..5026601)
Genome browser
AA seq
1176 aa
AA seq
DB search
MLNALMKALSGERDIDSIVEGIRSGMKEQLVSGLAGSTRQVMMAALHHQLERPLLVVTHN
MFSAQKVAEDLQECLSSDQVLLYPANELVAAEAAISSPEVIAQRIEALTGIARGFRGIVV
TPYAGLRRFLPARETMASSHLSIAVGDEVKLDSFLESLVFLGYERAERVEAAGEFSVRGG
IVDLYPLTSPYPYRIEWFDDEIDSIRSFDAADQRSVEKLKQLNIPPAKEWIADPTRFAQA
AEAASARLEEQLARMTDRQVKEKLQQEIGHDIERLRGASYFSEMYKYVSLLYPERHTLYD
YMPQDTLLLIDEPARVMETAKQLERDEAEWSTHLLQNGKSLPSLELGLTADAAMGKRPFQ
TLFMALFLRQVPHTQPQNIVNVMCRTMQNFHGQMNVLKAEMERWKKAGANVIILANGPER
VERVRRVLQDYQIPEPTIMTGNLQSGFELPSIHLVVITEGEMFSQKQRKSRRADASMKMD
NAERIRNYTELKIGDYVVHQNHGIGKYIGIGTLEINGIHKDYLHIMYAGGDKLSVPVDQL
HLIQRYVSSEEKEPKIYKLGGTEWTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFDKD
TPEQQEFEDLFPYEETRDQLRAIVEIKKDMELPRPMDRLLCGDVGYGKTEVAVRAAFKAA
IEGKQVAILVPTTILAQQHYETFRERFADYPFNIQVMSRFRSRKDQNETIKGLKTGVVDV
VIGTHRLLSQDVVFKELGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS
MLGVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELSRDGQVYFLFNRVQGIHQMA
DHIKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH
DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIA
MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKAELDGVAIRDQQELSTLID
LNIDAYLPPNYIYDSIQKIEIYKKVAGLASLEEVEELRDELIDRFGEPPLAVLQLLAVAR
LKLHAKQYGLESIVQRGDTVTMKVHPSAEPWLDRKKLATIAARIDRRIVVDREAHGTVKI
NARGLDGMQLLMQLEQFMLEATDAIKAKGELQHVAK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaacgcactcatgaaagcattatctggagagcgggatatcgactccatcgtcgaa
ggcattcgcagcgggatgaaggagcaactggtatccggcctggccggttcgacgcggcag
gtcatgatggctgctctgcatcatcagttggagcggcccctgctggtcgtaacgcacaat
atgttctctgcacagaaggtggcggaggatctgcaagaatgcttgtcatcggaccaagta
ttgttgtacccggcgaatgagctggtcgctgcggaagcggccatatccagtccggaagtg
attgcacagcggatagaggcactgactggcatcgcccgcggattccgcgggatcgtcgta
accccgtatgcggggctgcggcggtttttgcctgcccgggagacgatggcatcctctcat
ttgtccatcgccgtgggcgacgaggtgaagctagattccttcctcgaatccctggtcttt
ctcggctatgagcgggccgaacgggttgaagcggctggagaattcagtgtccggggcggc
atcgtcgacctttacccgctgacatcaccttatccgtacaggatcgagtggttcgacgac
gagattgattcgatccgttccttcgatgcggccgatcagcgttcggtggagaagctgaag
cagttgaatatccccccggccaaggaatggattgccgacccaacacgcttcgcccaggcg
gccgaagcggcttccgcacgtctggaggagcagctcgccagaatgaccgaccgccaggtg
aaggagaagctgcagcaggagattggtcacgatatcgagcggctgcggggcgcatcctat
ttcagtgaaatgtacaaatacgtatcgctgctctatccggagcggcatacgctctatgac
tatatgccgcaggatacgctgcttctgatagacgagccggcccgggtcatggagacggcc
aagcaactggaacgcgatgaagcggagtggagcacgcatctgttgcagaacggcaaatcg
ctgccgtcgctggagctgggcctcaccgctgacgcggccatgggcaagcgcccgttccag
acgctgttcatggcgctgttcctgcgccaggtgccgcacacccagccgcagaacattgtc
aatgtcatgtgccggacgatgcagaatttccatgggcagatgaatgtgctcaaggccgag
atggaacggtggaaaaaagcgggggcgaatgtcatcattctggctaacggtcccgagcgg
gtagaacgggtgcgccgggtgctgcaggactaccagattccggagccgacgattatgacc
ggcaatctgcagtcgggcttcgagctgccttcgatccatctcgtcgttatcaccgaaggc
gagatgttctcccagaagcagcgcaagtcgcggcgcgccgacgcaagcatgaagatggac
aatgcggagcgaatccgcaactataccgagctgaaaatcggggattacgtcgtccatcaa
aatcatggcatcggcaaatatatcggcatcggcacgttggagatcaacggcattcataaa
gactatctgcatattatgtatgccggcggcgacaagctgtccgtaccggtcgatcagctc
catctcattcagcgctatgtcagttcggaggagaaggagccgaaaatatacaagctgggc
ggaacggaatggaccaaggttaaaaacaaggtccgttcatcagtcaaggatattgccgac
gatctgattaagctgtatgccgctagacaagcctcgtccggctatgccttcgataaggat
acgccggagcagcaggaattcgaagatctgttcccgtatgaagagacgcgggatcagctg
cgggcgatcgtcgagattaagaaggatatggagctgccacggccgatggatcggctgttg
tgcggcgacgtcggctacggcaagaccgaggtcgcggtgcgcgccgccttcaaggcggct
atcgaaggcaagcaggtggcgatcctcgtgccgacgacgatcctggcccagcagcattac
gagacgttccgcgagcgcttcgcggactatccgttcaatattcaggtgatgagccggttc
cgatcgcgcaaagatcagaacgagacgatcaagggattgaagacgggggtcgtcgatgtg
gtcatcgggacgcaccgcctgctctctcaagatgtcgtgttcaaggagcttggattgctg
atcgtggatgaagagcagcgcttcggcgtcacccacaaggagaagctgaaaaagctgaag
acgaatgtggacgtgctgacgctgacggccacgccgataccgcgcacgcttcatatgtcg
atgctcggcgtgcgtgacttgtctgtcatcgagacgccgccggagaaccgcttcccggtt
cagacgtacgtgctggaatacagtgattcgctggtgagagaagcgatagaacgcgagctg
tcccgcgacggccaagtgtacttcctgttcaaccgggtacaaggcatccatcagatggcg
gaccatatcaagatgctggtgccggaagcgaaggtggcggtaagccacggccagatgtcg
gagacggagctggagaagacgattctcgacttcctcgacggagagtacgacgtgctggtc
agcacgagcattatcgagaccggggtggacatcccgaatgtcaatacgctcatcgtgcat
gacgcggacaagatgggcctgtcccagctgtatcagctgcgcgggcgcgtcggacgctcg
aaccggatcgcctatgcgtacttcacgtaccagcgcgacaaagtattgaacgaggtcgcg
gagaagcgtcttcaagcgatcaaggagttcaccgagctcggctccggcttcaagatcgcg
atgcgcgacctgtcgatccggggcgcgggcaatctgctgggcgcggagcagcatggattc
atcgcttcggtcggcttcgatctgtactcgcagatgctggcggatgagatcaacaagcgc
aaagccgagctggacggggtcgccattcgcgaccagcaggagctgtcgacgctcatcgat
ctcaatatcgacgcctatttgccgccgaattatatttatgatagtattcagaagatcgag
atctacaaaaaggttgctggtctcgcctcattggaggaagtcgaagaattgcgcgatgaa
ctcatcgatcgctttggtgaaccgccccttgccgtcttgcagctgcttgccgtcgcacgg
ctgaagctgcatgcgaagcagtatggattggaatccatcgtgcagcgcggggatacggtc
accatgaaggtccacccttcggctgaaccatggcttgaccgtaagaagctggcaacgatt
gcggcccgaatcgatcggcgcatcgtcgtcgatcgcgaagcgcatggcaccgtgaaaatc
aatgcgcgcgggttggatgggatgcagctgctgatgcaattggagcagttcatgcttgaa
gctacagatgcgatcaaagcgaagggagaattacaacatgttgcaaaataa
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integrated database retrieval system
