Paenibacillus dendritiformis: QJQ58_23875
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Entry
QJQ58_23875 CDS
T09074
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJQ58_23875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdy03019
]
QJQ58_23875
03009 Ribosome biogenesis [BR:
pdy03009
]
QJQ58_23875
Enzymes [BR:
pdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJQ58_23875
Messenger RNA biogenesis [BR:
pdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJQ58_23875
Ribosome biogenesis [BR:
pdy03009
]
Prokaryotic type
rRNA helicases
QJQ58_23875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CbiQ
MBL_MAP1B
HEM4
Motif
Other DBs
NCBI-ProteinID:
WGU93542
LinkDB
All DBs
Position
5326385..5327935
Genome browser
AA seq
516 aa
AA seq
DB search
MGIRQEWANRLTKQGITAPTPIQMQAIPAALAGRDAVLQAQTGTGKTLAFLLPILQRIDP
GQPQAQALIVAPTRELALQITAEAKKLTDSAPDGSGGIHVLAAYGGQDVEKQIRKLQGAC
QLVIGTPGRLTDHLRRGTFDGSGIRILVLDEADQMLHMGFLPEVEDVIAHTPSSRQTLLC
SATMPEPVRALAARFMRSPLDIRVEAEQVTVKDISQLVVETTDRAKQETLFRLLDEHRPY
QAVIFCRTKRRAQKLYEALKAKGYDADELHGDLTQAVREQVMKRFRRANVQLLVATDLAA
RGLDVEGITHVFNYDIPHDAESYIHRIGRTGRAGGAGWAITLAAPRDESYLALIEQGIRM
KLRRQSRGGPSAGRGESERGESGREAARRGSERGAGARRAADAGPQRRRAGGGPGGRPGA
RRGQEEGRSERTQRPNPARAGGGAERPADRRRKAADGRAQAERGQGGRGAAQTARRGHAP
VTAGGGKRGSSAAGQRSGRKAAPGPGKKGKAPRRRK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgggcattcgccaagagtgggcgaatcgattaacgaagcaaggcattacggcgccgacg
ccgattcagatgcaagcgatccctgccgcgctggctggccgggatgccgtgctgcaagca
cagaccggaacggggaagacgctggcattcctgctcccgatcctgcagcggatcgatccg
gggcagccccaggcgcaggcgcttatcgtcgcgccgacgcgcgagctggccctgcagatt
acggcagaggccaagaagctaacggactccgccccggatggaagcggaggtattcatgtg
ctggccgcttacggaggccaggatgtggagaagcagatccgcaagctgcagggagcatgc
cagttggttatcggcacgccgggccgcttgaccgatcatctgcgccggggcaccttcgac
ggctccggcatccgtattctcgtgctggatgaggccgatcagatgctgcatatgggcttc
cttcccgaagtggaggacgtcatcgcacacacgccgtccagccggcagacgctgctctgc
tcggcgacgatgccggagccggtccgcgcgctcgctgcgcgcttcatgcggtcgccgctt
gatataagggtggaggcggagcaggtaacggtgaaggatattagccagctagtggtggag
acgacggatcgggcgaagcaagagacgctgttccgtcttctcgacgagcatcggccttat
caggccgtcatcttctgccgcacgaagcggcgggcccagaagctgtacgaggcgctcaag
gcgaagggctatgacgcggacgagctgcacggcgatctgacccaggcggtgcgggagcag
gtgatgaagcggttccggcgggctaatgtgcagctgctggtggcgaccgatctggccgca
cgcggactggacgtggaaggaattacgcatgtgttcaattatgatattccgcatgatgcg
gagagttatattcaccggatcggccggacgggccgtgcgggcggagccggatgggccatt
acgttggccgcgccccgggatgagagctatctcgctctcatcgagcagggcatccgcatg
aagctgcgccggcagagccgaggcggcccgtccgccgggcgcggcgagagcgagcgtggc
gagagcggacgcgaagccgcacggcgcggaagcgaacggggcgccggtgcacgccgcgca
gcagatgcggggccgcaacgccgcagagccggtggcggcccaggcggccgacctggagcg
cgccgcggccaggaggaaggccgcagcgaacgaacgcagcggccgaacccggcccgcgcg
ggaggcggcgcagagcgtccggcagaccgccggcggaaggcggccgacggccgggcgcaa
gccgagcggggccagggcggccgcggggcggcccagactgcccgccgcggccatgcgccg
gtcaccgcgggcggcgggaagcggggctcgtccgcggccggacaacgctccgggcggaag
gccgcgccaggaccgggcaagaaggggaaagcgccgcgcagacggaagtaa
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