Paenibacillus dendritiformis: QJQ58_24105
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Entry
QJQ58_24105 CDS
T09074
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pdy
Paenibacillus dendritiformis
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdy03019
]
QJQ58_24105 (hrpB)
Enzymes [BR:
pdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QJQ58_24105 (hrpB)
Messenger RNA biogenesis [BR:
pdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QJQ58_24105 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGU93583
LinkDB
All DBs
Position
5379375..5381936
Genome browser
AA seq
853 aa
AA seq
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MVEQQNRLPIEDALPALKEALQAARGAVLVAEPGAGKTTRVPLALLDEPWLRGQRIVMLE
PRRLAARSAARYMARTMGEKPGETVGYRVRLDTKVSAATRVEVITEGVLTRMLQEDPALE
GVGLLIFDEFHERHLHADLGLALALESQALLRDDLRILVMSATLDAEPVAALLGGAPVIH
SPGRTYPVDTHYAPQPESVPLDRAVARMIAAALQRHDGDLMAFLPGAGEIRRTEEALHAE
LRSHGMDGRVRVAPLFGQLSAEAQDAAIAPGTDGRRKVVLATALAETSLTVEGVRIVVDS
GLMRVPRFSPRTGMTRLETVPVFRASADQRRGRAGRLGPGVCYRLWPEARHAQLPADNTP
EILDADLAPLVLELAAWGTAAADLRWLTPPPAAALAQGADLLQRLGALTPAGALTAHGRE
LAASGLHPRLAHMIVQAEPLGLRAAACDLAALLGERDLFRKAPGAAETPLSPDLTLRLEA
LAARRAPQAAAAAGGRLDEGAVRQVREQAQRYRQAFGAPADAPPPSAAEAGLLAAFAYPD
RIAERRADGRYLLANGRGAAFAPAVARSAPLAREPYLVALQLDDTGADSRILLAAALDRA
LLERHFAEQLVRDTQVAWDAAAQAVRARERVRLGALTLADAPHPAPDAEAVQRALLQGIA
REGLALLPWTKQARQWQTRLQFMHRHQPDWPDAGEEALLATLEEWLGPHVYGMRSRADLQ
SLNVAAALEALLPWEKRHQLEREAPTHMTVPSGSRIPIDYTDPDRPVLAVRLQEVFGWKE
TPRIANGAVPLTLHLLSPAQRPVQVTQDLASFWQNTYFEVKKDLKGRYPKHYWPDDPHEA
IATRRTRPQPPRG
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggagcaacagaaccgattgccgatagaggatgccctgcccgcattgaaggaggct
ctgcaggctgcccgcggggcggtgctcgtcgccgagccgggggcgggcaagacgacgcgc
gtgccgttggcgctgctggacgagccgtggcttcgcggccagcgcatcgtgatgctggag
ccgcggcggctggcggcccgttcggccgcccgctatatggcgcggacgatgggggagaag
cccggcgagaccgtgggctatcgggtccgcctcgatacgaaggtgagcgccgcgacgcgg
gtggaagtcatcacggagggcgtcctgacccggatgctgcaggaggacccggcgctggag
ggcgtggggctgctcatcttcgatgaattccatgagcggcatctgcacgccgatctcggc
ttggcgctggcgctcgaatcgcaagcgctgctgcgcgacgatctgcgtatcctcgtcatg
tccgccacgctggatgccgagccggtcgccgccctgctgggcggcgcgcccgtcatccat
agcccgggacggacgtatccggtggatacgcattatgccccgcagccggagagcgtgccg
ctcgaccgggcggtcgcccggatgatcgccgctgcgctgcagcgccatgacggcgacctc
atggcgttcctgcccggcgcgggcgagattcgccgcacggaggaggcgctccatgccgag
ctgcgctcgcacggcatggacgggcgagtgcgggtcgccccgctgttcggccagctctcg
gccgaagcgcaggacgccgcgatcgcgcccggaacggacggccggcgcaaggtcgtgctc
gccacggcgctggccgagacgagcttgacggtagaaggcgtccgcatcgtcgtcgacagc
ggcctcatgcgcgtgccgcgcttctcgccgcgcaccgggatgacgcgtctggagacggtg
cccgtcttccgcgcgtctgccgaccagcggcgcggacgggccggccggctcggccccggc
gtctgctaccggctctggccggaagcgcgtcacgcccagcttccggcggataatacgccg
gaaattctcgacgcggacctggccccgctcgtgctggagctggcggcctggggcactgcc
gccgccgacctgcggtggctgaccccgccgcccgcggccgccctggcccaaggcgccgat
ctgctccaacggctcggcgccttgacgccggcgggggcgttgacggcgcacgggcgcgag
ctggctgcgagcggcctgcacccgcggctcgcgcacatgatcgtgcaggccgagccgctc
ggtctccgcgccgccgcctgcgatctggcggcgctgctcggcgagcgcgacctcttccgc
aaggccccgggcgcggcggagacgccgcttagcccggatctgaccttgcgcctggaggcg
ctcgcggcccgccgcgctccgcaggcggcggctgcagccggcggacggctggacgaaggc
gccgtccgccaggtgcgcgagcaggcgcagcgctaccgccaggcgttcggcgcccctgcg
gacgcgccgccgccatccgccgccgaggcgggcctgctggccgcgttcgcgtacccggac
cgcatcgcggagcgccgggcggacggccgctacctgctcgcgaacgggcgcggggcggcg
ttcgcccccgccgtggcccgcagcgccccgctggcgcgcgagccctacctcgtcgccctg
cagctcgacgacaccggcgcggacagccgcatcctgctggcggcggctttggatcgcgcc
ctgctggagcgccacttcgccgagcagctcgtgcgggacacgcaggtcgcctgggacgcg
gcggcccaagccgtccgtgcgcgcgagcgggtccggctgggcgcgctcacgcttgccgat
gcgccgcacccggcccccgatgcggaggcggtgcagcgcgcgcttctgcagggcatcgcc
cgggaagggctggccctgctgccgtggaccaagcaggcgcgccaatggcagacgcgcctt
caattcatgcaccggcatcagccggattggcccgatgccggggaggaagccctcctcgcg
acgctggaggagtggctcggtccgcacgtatacggaatgcgaagccgtgcggacctgcag
agcctcaacgtcgcggcggcactcgaagcgctgctcccgtgggagaagcggcatcagctc
gagcgggaagcaccgacccatatgacggtgccgagcggatcacggatcccgatcgattac
accgatccggatcggccggtgctcgccgttcggctccaggaagtgttcggctggaaggag
acgccgcgcatcgcgaacggcgcagtgccgctgaccctgcacctgctctcgccggcccag
cgtccggtgcaagtcacgcaggacttggcgagcttctggcagaatacctacttcgaagtc
aaaaaagatctgaaaggccgctaccccaagcattattggccggatgatccgcatgaagca
atcgcgacacgccggacgaggccgcagccgccgcgcggataa
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