Phytobacter diazotrophicus: HHA33_05095
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Entry
HHA33_05095 CDS
T06586
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz02020
Two-component system
pdz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HHA33_05095 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HHA33_05095 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdz03021
]
HHA33_05095 (rpoN)
Transcription machinery [BR:
pdz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HHA33_05095 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QJF15954
LinkDB
All DBs
Position
complement(1077830..1079263)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVDAQQ
SQDNEGLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGSSTDYLDDELPIYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMGDEEIGLDEVEAVLK
RIQRFDPVGVAARDLRDCLLIQLSQFAKETPWCDEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN
QHYAAMCGGARNDADSQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaattaaggctcagccaacagctagccatgacgccacagttgcaa
caggctattcgcctgctgcaactgtccacgttggaacttcagcaagaactccagcaagct
ctggaaagtaatccattgcttgagcaaaccgatcttcacgaagaagtggatgcacaacaa
tcccaggacaatgaagggctggacacggttgacgctctcgagcaaaaagagatgcccgaa
gagttgcccctggatgccagttgggacgaaatctataccgctggcaccccttccggtagc
agcaccgattaccttgacgatgaactgcctatttaccagggagagaccacccagtcgcta
caggattacctgatgtggcaggtggaactcacccccttctcggataccgatcgcgccatt
gcgacctccattgtcgacgctgttgatgacacgggttatctcaccgttcccctggaagac
atcctggaaagcatgggtgatgaagagatcggtctggatgaagtcgaagcggtactgaaa
cgtattcagcgtttcgatccggtcggtgttgcggccagggatctgcgcgattgcctgttg
atccaactctctcaatttgccaaagagaccccctggtgcgatgaagcgcgtttaatcatc
agcgatcacctggatctgctcgctaaccatgacttccgtacgctgatgcgcgtcacacgt
ctgaaagaagatgtgctaaaagaggcggtcaatttaatccagtctcttgatccacgccct
ggccagtcaatccagaccggcgagcccgaatatgtcattcctgacgtgctggtgcgcaag
cacaatgggcgctggacggtcgagctgaactccgacagcattccacgtttgcaaatcaac
cagcactacgccgctatgtgcggtggggcgcgtaacgatgccgacagccagtttatccgc
agcaatctgcaggaagcgaaatggctgatcaaaagccttgagagccggaatgacaccctg
ttaagggtaagccgctgcattgttgaacagcagcaggcgtttttcgagcaaggcgaagaa
tttatgaaaccgatggttctggccgatatcgctcaggccgtcgagatgcatgaatcaacg
atttcccgtgtcacgacccaaaaatatctgcacagtccgcgtggcatctttgagcttaaa
tatttcttctccagtcatgtgaataccgaaggcggcggcgaagcctcgtcaacggctatc
cgtgcactggtgaagaaattaattgccgcagagaatcctgcgaagccgttgagtgacagt
aagctgactaccatgctctcagatcagggtattatggtagcgcggcgaaccgttgcgaag
tatcgagagtctttatccattccgccgtctaatcagcgcaaacagctggtgtga
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