Phytobacter diazotrophicus: HHA33_05280
Help
Entry
HHA33_05280 CDS
T06586
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HHA33_05280 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdz03019
]
HHA33_05280 (pnp)
03016 Transfer RNA biogenesis [BR:
pdz03016
]
HHA33_05280 (pnp)
Enzymes [BR:
pdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HHA33_05280 (pnp)
Messenger RNA biogenesis [BR:
pdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HHA33_05280 (pnp)
Transfer RNA biogenesis [BR:
pdz03016
]
Prokaryotic type
tRNA degradation factors
HHA33_05280 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
aRib
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QJF15989
LinkDB
All DBs
Position
1110840..1112975
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVSMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA
GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSDVVAALVAEDETLDANELGDILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQTQPEAAPEAPQAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggccaacataccgttacgctggaaacc
ggcatgatggcacgtcaggcgacggcagccgttatggttagcatggatgacactgcggta
ttcgttaccgttgtgggcgctaaaaaagctaaaccgggccaggatttcttcccgttaact
gttaactatcaagagcgtacctacgctgctggtaaaatcccgggtggtttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggcttcgttaacgaagttcaggttattgcaaccgtggtttccgtt
aacccgcaggttaacccggatatcgtttctatgattggtgcttccgcagcactgtctctg
tcaggtattccgttcaatggcccgattggcgcagcgcgcgtgggttacattaacgatcaa
tatgtactgaacccgacccaggaagaactgaagtccagcaaactggacctggtggtagcg
ggtaccgaaggtgcggtattgatggtggaatccgaagcagaattgctgagcgaagaccag
atgctgggcgcagtcgtatttggccacgaacagcagcaggttgttatccaggccattaac
gacctggtaaaagaagcgggcaaaccgcgttgggactggcagccagaagccgtcaacgaa
gcgctgaacgcacgcgttgctgctctggctgaagcgcgtctgagcgatgcttaccgcatc
actgacaaacaagagcgttatgctcaggttgatgtcattaaatctgacgttgtagctgcg
ctggttgcagaagatgaaaccctggatgccaacgagctgggcgacatcctgcacgctatc
gagaaaaatgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgatggtcgcgaa
aaagacatgatccgtggtctggacgtgcgcactggcgtattgccgcgtactcacggttcc
gcgctgtttacccgtggtgaaactcaggctctggttaccgcaacgctgggtactgcccgt
gatgcgcagatcattgatgagctgatgggtgagcgcactgacagcttcctgttccattac
aacttccctccgtactccgtaggtgaaaccggtatggttggctcgccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtactggctgtaatgccggaagcggataaa
ttcccgtacaccgttcgtgtggtgtctgaaatcaccgaatccaacggttcttcttccatg
gcttccgtgtgtggcgcttctctggcgctgatggacgcaggcgtaccgatcaaagcagcc
gttgcgggtatcgcaatgggcctggtgaaagaaggcgacaactttgttgttctttctgac
atcctgggcgatgaagatcaccttggcgatatggacttcaaagtagcgggctcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggcatcaccaaagagatcatgcag
gttgcgctgaaccaggctaaaggtgctcgtttgcacatcctgagcgtgatggagcaggcg
atcaatgcgccgcgcggcgatatctctgaatttgcaccgcgtatccacaccatcaagatc
aacccggacaaaatcaaagacgtcatcggtaaaggtggctctgtgattcgtgcgctgacc
gaagaaaccggcactaccatcgaaatcgaagatgacggcaccgtgaaaatcgcagcgacc
gatggcgagaaagcgaaattcgctattcgtcgtatcgaagagatcactgcagaaatcgaa
gtcggtcgtatctacaacggtaaagtgacccgcatcgttgactttggcgcgttcgttgcc
atcggcggcggtaaagaaggtctggttcatatctctcagatcgctgacaagcgcgttgag
aaagtgactgactatctgcagatgggtcaggaagtaccggtgaaagttctggaagttgat
cgccagggccgtattcgtcttagcattaaagaagccactgaacaaactcagcctgaagca
gcgccggaagcgccgcaagcagagcagggcgagtaa
DBGET
integrated database retrieval system
