Phytobacter diazotrophicus: HHA33_11145
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Entry
HHA33_11145 CDS
T06586
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HHA33_11145 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdz03400
]
HHA33_11145 (sbcB)
Enzymes [BR:
pdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HHA33_11145 (sbcB)
DNA repair and recombination proteins [BR:
pdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HHA33_11145 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HHA33_11145 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HHA33_11145 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QJF17062
LinkDB
All DBs
Position
complement(2358111..2359535)
Genome browser
AA seq
474 aa
AA seq
DB search
MSDSTATPTFLFHDYETFGTSPSLDRPAQFAAIRTDADFNIIGEPEVFYCKPADDYLPHP
EAVLITGITPQHARANGVNEADFARRIHDLFTVPKTCVLGYNNVRFDDEVTRNIFYRNFY
DPYAWSWQNNNSRWDLLDVMRACYALRPDGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAQLVKTHQPRLFDYLLSHRNKHKLAALIDVPQMTPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDMSPLLELDADALRERLYTAKAELGDNAAVPVKLV
HLNKCPILAQAKTLRPEDAERLGIDRKQCLDNLNVLRNNPQVREKVLAIFAEAEPFVPSE
NVDTQLYNGFFSDADRAAMNILLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
DEQQRWLEHRRQVFTPEFLQAYADELQMLSQQYADDKAKLTLLKSLWQYAQEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgattcaacggcaacgcccacatttctttttcatgactacgaaacgttcggtacc
agcccctcgctggatcgccccgcacagtttgctgcgattcgtaccgacgccgatttcaac
atcattggcgagccggaagtcttttactgtaaaccggcagatgactatttgcctcaccca
gaggcagtgctgattaccggcattacgccacagcacgccagagcgaatggcgtcaatgaa
gctgactttgcccgccgcatccatgatttgttcaccgtccccaaaacctgcgtactcggc
tataacaatgtccgcttcgatgacgaagtgacgcggaatatcttctatcgcaacttttac
gatccctatgcctggagctggcaaaacaacaactcgcgctgggatttgttggatgtgatg
cgtgcctgctatgccctgcgcccggacggcatcaactggccggagaatgacgatgggctg
ccgagtttccgccttgagcatctgacaaaagcgaacggtattgaacacagcaatgcccac
gatgcaatggccgacgtttacgccactatcgccatggcgcaactggtgaaaacccaccag
ccgaggctgtttgattatctgctgagccaccgtaataagcataaactggcggccctgatt
gatgtcccgcagatgacgccgctggtccatgtttccggcatgtttggcgcctggcgcggc
aataccagttgggttgctccgctggcctggcacccggaaaaccgcaatgccgtgatcatg
gtggacctcgcgggcgatatgtcgccgttgctggaactggatgctgacgcgctgcgcgag
cgcttgtataccgcaaaagccgagttaggtgacaatgctgccgtgccggtgaagctggta
catctgaataaatgccctatcctggcacaggcgaaaacgctgcgtcctgaggatgctgaa
cggctggggattgaccgcaaacagtgtctggataacctgaacgttctgcgcaataacccg
caggtacgcgaaaaagtactggctatctttgccgaagccgaaccgtttgtaccctctgag
aatgtggatacacaactttataacggttttttcagcgacgcagaccgtgcggcaatgaac
attctgctggaaaccgagccacgtaatctcccggcgctggatataacctttgtcgataag
cgaatcgagaaactgctgtttaactaccgggcgcgtaacttccccggaacgctcgattat
gacgaacaacagcgctggctggagcatcgccgtcaggtgtttacgcctgagtttttgcag
gcctacgccgatgagctacagatgctgtcccagcagtacgccgacgataaagcgaagctg
acactgctgaaatcgctctggcagtacgcccaggagattgtgtag
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