Phytobacter diazotrophicus: HHA33_12150
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Entry
HHA33_12150 CDS
T06586
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HHA33_12150 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdz03019
]
HHA33_12150 (rne)
03009 Ribosome biogenesis [BR:
pdz03009
]
HHA33_12150 (rne)
Enzymes [BR:
pdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HHA33_12150 (rne)
Messenger RNA biogenesis [BR:
pdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HHA33_12150 (rne)
Ribosome biogenesis [BR:
pdz03009
]
Prokaryotic type
rRNA processing factors
HHA33_12150 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QJF17240
LinkDB
All DBs
Position
complement(2533304..2536555)
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRAAVSAIETRQGGVRCVIVPNDQME
TPHYSVLRVRKGEETTTLSYMLPKLHEEEMAMPSDEESAERKRPEQPALAAFVMPEVPPA
PTAPEAPVAKAQPAVSSEPSVAAPAAPGLLSRLVSALKNLFAGSETAAPAEVQEEKKEEK
QERQQDRRKSRQGNRRDRNERREPRADGNEGRENRDDNRRNRREKPQQNAEAREARQPVP
VAAEETEKTKQRDEQQPSRRERNRRRNNDEKRQAQQDVKALNREEQPEQEAEQEERVQVM
PRRKQRQLNQKVRFGDAPASTSEEAVAVEPGTTEAPVQRTELAKVDLPAVVENVAEQEET
AENRDTAGMPRRSRRSPRHLRVSGQRRRRYRDERYPAQSAMPLEIACASPEMASGKVWVR
YPVTRPQDEVQEAPVVEQQNSVTATDVAPAIAEVEQVVATAQQEQQSVVADVQAPAEEVV
EVAPQAPVIEPEPVVVETTHPEVIEAPFEAQPELIAEEDRPVAEEVAKTAEPAVVTPVVE
ETAPVVAEQPQAPVAVEEKQPEATPVAPVVEPVAPVVEPVAPVVEPVAPVAAAIERVAPV
AASEVHHATAPMTKAPAPAYVPEAPRHSDWVRPQFNFDGKGSAGGHSATHTATAPATRPN
AAE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgttgat
gggcagcgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaagcgaac
atctacaaaggtaaaatcacccgaattgaaccgagcctggaagctgcctttgttgattac
ggcgctgaacgtcacggtttccttcccctcaaagaaattgcccgcgaatatttccctgcc
aattacaactctcatggccgtccgaacatcaaagatgtcttgcgcgaaggtcaggaagtt
atcgtccagattgataaagaagaacgcggcaacaaaggcgctgcgctgactacctttatt
agcctggcaggcagctatctggtactgatgccaaacaacccgcgcgcgggtggcatttct
cgtcgtattgaaggcgatgaccgtaccgaactgaaagaagcgctggccagcctcgaattg
cccgatggcatgggtctgatcgtccgcaccgccggtgtgggtaaatctgctgatgctctg
cagtgggatctgagcttccgtctgaaacactgggaagctattcagaaggccgctgaaaac
cgccctgctccgttcctgattcaccaggaaagtaacgttatcgttcgtgctttccgtgat
tatctgcgccaggacatcggcgaaatccttatcgataacccgaaagtgcttgagctggct
cgccagcatatctccgcgctgggccgtccggatttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgtttagccactaccaaatcgaatcgcagattgaatccgccttccag
cgtgaagtacgtctgccgtccggcggctctatcgttatcgatagcaccgaagcgttgacc
gccatcgatatcaactccgcgcgtgcaacccgtggcggtgatatcgaagagaccgccttt
aacactaacctggaagcggcagacgaaattgcacgtcagttgcgtctgcgtgacctcggt
ggtctgatcgttatcgactttatcgatatgacgccggtgcgccatcagcgcgcggtagaa
aaccgtctgcgcgaagccgttcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgcttcggcctgctggagatgtcccgtcagcgcctgagcccgtcactcggcgagtccagc
caccatgtgtgtccgcgttgtagcggaaccgggactatccgtgacaacgaatccctgtca
ctttctattctgcgtctcatcgaagaagaagcgctgaaagaaaatacccaggaagtgcat
gccatcgttccggtgccgatcgcctcctatctgttgaacgaaaaacgcgccgcagtcagc
gctattgaaacccgtcagggtggcgtgcgttgcgtaatcgtaccgaacgatcagatggaa
acgccgcactattccgtactgcgtgtgcgtaaaggcgaagagacaaccaccctcagctac
atgctgccgaagctgcatgaagaagagatggctatgccgtcagacgaggaatctgccgag
cgtaaacgtcctgagcagcctgcgctggctgccttcgtcatgccggaagttccgcctgcg
ccaacggcacctgaagcccctgtagcgaaggcgcaaccggctgtcagcagcgagccttca
gtagccgcacctgctgctccgggtcttcttagccgtcttgtctccgccctgaaaaacctg
tttgccgggagtgaaactgccgcaccagccgaagttcaggaagagaagaaagaagagaag
caggagcgccagcaagatcgccgcaaatcgcgccagggtaaccgtcgtgaccgcaatgaa
cgtcgtgagccgcgtgcagatggtaatgaagggcgtgagaaccgcgatgacaatcgccgt
aatcgccgtgagaaaccacagcagaatgccgaagcgcgtgaagcccgccagccagtaccc
gtagctgcggaagagacggaaaaaacgaaacagcgtgatgagcagcagccttcccgccgc
gagcgcaatcgtcgtcgtaataacgacgaaaaacgccaggcgcagcaggatgtgaaagca
ctgaaccgtgaagaacaacctgagcaggaagccgaacaggaagagcgcgttcaggtgatg
ccgcgccgtaaacagcgtcagttgaaccagaaagtccgtttcggtgatgctccggcaagc
acaagtgaagaggctgttgccgtagaaccgggtaccacagaagcccctgtacaacgtaca
gagctggcgaaagtggatctgccggccgttgttgagaacgttgctgagcaagaagaaact
gcagaaaaccgtgatactgcaggtatgccgcgtcgttctcgccgttcgccgcgtcatctg
cgcgtcagtggtcagcgtcgccgtcgctaccgtgatgagcgttacccggcacagtccgca
atgccgctggagattgcctgtgcttctccggaaatggcgtccggtaaagtgtgggttcgc
tatccggttacgcgtcctcaggacgaggtgcaagaagcaccggttgttgagcagcaaaac
agtgtcaccgctaccgatgtcgcacctgccattgccgaagtcgaacaagttgtggccacc
gctcagcaagagcagcagtccgtcgtagctgatgtacaggcaccggctgaggaagtggtt
gaagtcgcaccgcaggcaccggttatcgagccagagcctgttgtggtcgaaaccacgcat
ccggaagtgatcgaagccccgtttgaagcacagccggaattgatcgcagaggaagaccgt
ccggtcgcggaagaggtggcgaaaaccgctgaacctgcggttgttacaccggttgttgaa
gaaacagcacctgttgttgcagagcaaccgcaagcgcctgttgctgtcgaggaaaaacag
ccagaagctactccggtagccccggttgttgaacctgtagccccggttgttgaacctgta
gccccggttgttgaacctgtagcaccggttgctgcagcgattgagcgcgtagctcctgtc
gcagccagcgaggtccatcatgccactgcgccgatgaccaaagcgcctgcacctgcctat
gtgccggaagcgccacgtcacagtgactgggtccgtccacagttcaactttgacggcaaa
ggttctgcaggcggtcacagcgccacgcataccgcaacggcgccagctacacgaccgaac
gccgcggaataa
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