Phytobacter diazotrophicus: HHA33_14635
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Entry
HHA33_14635 CDS
T06586
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdz
Phytobacter diazotrophicus
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdz03019
]
HHA33_14635 (hrpA)
Enzymes [BR:
pdz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HHA33_14635 (hrpA)
Messenger RNA biogenesis [BR:
pdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HHA33_14635 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
NACHT
T2SSE
ResIII
AAA_11
PhoH
AAA_16
NTPase_1
AAA_23
AAA_30
TsaE
Motif
Other DBs
NCBI-ProteinID:
QJF17698
LinkDB
All DBs
Position
3037657..3041559
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQKKLTLSDLHQQLDSLMLRDRLRFARRLQGAKKVKNPEAQQGIFQAMAQEMNEAAGK
VMLREASRPAITYPDNLPVSQKKQAILEAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGACIGYKVRFSDHVSDNTLVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQEAPGDILIFMSGE
REIRDTADALNKRDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWAIVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERSQGAVMATE
KVTVYGLPIVAARSVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNLKLRAEIEELE
HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKASRETPDLLNFEKSMLIKEGA
EKVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGHTIDRDDW
HWDQVPDHLKITFRVVDEKNKKLSEGPSLSALKASLKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLDQQQAMWSGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFTALHEK
VRADLNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGFRRLGDTLRYLHAIEKRLEKLAVDPHRDRAQMLKVEQVQQAWQQWLNKLPPARREDEE
VKAVRWMIEELRVSYFAQQLGTPYPVSDKRVLQAMEQVSA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaaagaaattgaccttatccgatcttcatcagcagttagactcgctgatg
ctacgcgatcggttgcgttttgcccgccgcctgcagggggcaaagaaagttaaaaatcct
gaagcacagcagggcatttttcaggcgatggctcaggagatgaacgaagccgcagggaag
gttatgctgcgtgaagcctcacgtcccgccattacctatcccgataacctgccggtaagt
cagaagaaacaggcgatccttgaggctgtacgtgacaatcaggtcgtgatcgttgcgggc
gaaaccggctccgggaaaaccacccagttaccaaaaatttgtatggaactggggcgtggg
gtgaaagggctgattggtcatacccagccgcgccgcctggcggcacgcaccgtcgcaaac
cgcattgccgaagagctacaaaccgagccgggcgcttgtatcggctataaagtccgtttt
agcgatcatgtcagcgacaacaccctggtgaagttgatgactgacggcatcctgctggca
gaaatccagcaggatcgcctgttgatgcagtacgacaccattattatcgatgaagcgcac
gaacgcagtctgaacattgatttcctgctcggctacctgaaagagctgctaccccggcgt
ccggatctgaaaattatcattacgtcggcgaccatcgatccggaacgtttctcgcgccac
tttaataatgcgccgatcattgaggtatccggccgtacttatccggtggaagtgcgctac
cggcctattgttgaagaagcggacgataccgagcgcgatcagctacaggccattttcgat
gcagtggatgaactaagccaggaagcgccgggcgatatcctgatttttatgagcggtgag
cgtgaaatccgcgataccgccgatgcgctgaacaagcgcgatctgcgtcatacggaagtg
ttgccactctacgcgcggctctctaacagtgagcagaaccgcgttttccagtcacacagc
gggcgacgcattgtactggcgactaacgttgcggaaacgtcgctgacggtgccgggcatt
aaatatgtgattgaccccggtactgcgcgtatcagccgctacagttaccgtaccaaagta
caacgcctgccgattgagccggtttcccaggcgtctgctaaccagcgtaaagggcgctgc
gggcgtgtttccgaagggatctgtattcgtctctattcagaggacgatttcctctcccgt
ccggaatttaccgacccggaaatcctgcgtaccaacctggcgtccgttattctgcaaatg
accgcgctggggctgggcgatattgccgcgtttccttttgttgaagcgccggataaacgc
aatattcaggatggtgtgcgtctactggaagagctcggtgctatcaccactgacgaacag
gccactgcttacaagttaaccccgatggggcgtcaactcagtcagttgccggtagacccg
cgtctggctcgcatggtgttggaagcgcaaaaacacggctgtgtacgcgaggcgatgatc
atcacctcggcgttgtctattcaggatccgcgtgaacgtccgatggacaagcagcaggcg
tccgatgaaaagcaccgtcgtttccacgataaagagtctgatttccttgcgttcgtgaat
ctgtggaactaccttggcgagcagcagaaagccctctcgtcaaatcagttccgccgccag
tgcaagctggactacctcaactacctgcgcgtgcgcgagtggcaggatatctatacccaa
ctgcgccaggtggtgaaagagttggggatcccggtgaacagtgaaccggcagagtaccgc
gaaatccatatcgcattgctgaccgggctactgtcgcatatcgggatgaaagatgccgat
aaacaggagttcactggtgcgcgcaatgcgcgtttctctattttccctggttccggttta
tttaaaaagccgccgaaatgggccattgtggctgaactggtggagaccagccgcctgtgg
gggcgcatcgcggcgcgtatcgatccggaatgggtagagcctgtcgcccagcatctgatc
aagcgttcttacagtgaaccgcactgggaacgttcgcagggtgcggtgatggcaacggag
aaggtgacggtttacggtttgccgatcgtggctgcccgtagcgtgaactacagccagatt
gatccggccctgtgccgcgagttgttcattcgccacgcgctggtggaaggcgactggcag
acgcgccatgcgtttttccgcgacaacctcaaattgcgcgccgaaatcgaagagcttgaa
cataaatcccgtcgccgcgacattctggtcgatgacgatacgctgtttgagttctatgac
cagcgcatcagccatgatgtgatttctgcccgccactttgatagctggtggaagaaggcg
agccgtgaaaccccggatctgctcaactttgaaaagagtatgctgatcaaagaaggggcg
gagaaggtcagcaagctggactacccgaacttctggcatcagggcaacctgaaactgcgt
cttacctatcagtttgaaccgggtgcggatgccgacggcgtgacggtgcatattccgctg
ccgttgctcaatcaggttgaagaaagcggctttgaatggcaaataccggggctgcgtcgt
gagctggtcattgccctgattaaatcgttacccaaaccggtacgacgcaactttgtgccg
gcgccaaactacgcggaagcgtttttaggccgcgtaacgccgcttgaactgccgctatta
gatgcgctggagcgtgaacttcgacgcatgacggggcacacgattgatcgcgatgactgg
cactgggatcaggttcccgatcatctgaaaatcaccttcagggtggtagatgagaagaac
aagaaactgtcagaagggccgtcattaagtgcactgaaagcgtcgctgaaaggaaaagtg
caggagactctgtctgcggtggcagacgacggtatcgaacaaagtgggctgcatatctgg
agcttcggccagcttccggaaagttacgagcagaaacgcggcaactataaggtgaaggcc
tggcccgcgctggtggatgagcgcgacagcgtagccatcaagctgtttgataatccgctt
gatcagcaacaggctatgtggagcggcttacgccgtctgctgttgttgaatattccttcg
cccatcaaatatttacatgagaagttgccgaacaaagccaagctcgggctgtactttaac
ccgtatggcaaagtgttggatctgattgatgattgtatctcctgcggcgttgataagttg
attgacgaggcgggggggccagtctggacggaagagggctttacggcgctgcatgagaaa
gtccgtgctgacttgaatgaaacggtggttgagatagccaaacaggtcgagcagatcctc
acggcggtgttcaacattaacaaacgtctgaaagggcgtgtggatatgaccatggcgctg
gggttgtcggatattaaggcgcaaatgagcgggctggtctaccgtggttttgttactggc
aatggtttccgccgtctgggtgatacgctgcgctatctgcacgccattgagaagcgtctg
gagaagctggcggttgatccgcaccgcgaccgggcacaaatgctgaaagtcgagcaggtt
cagcaggcgtggcagcaatggctgaacaagctaccgccagcgcgtcgtgaagatgaagag
gtcaaagcggttcgctggatgattgaagagcttcgcgtcagttattttgcgcagcaactc
ggcacaccgtatccggtttccgataagcgcgtgttgcaggcgatggagcaggtgagcgcg
tag
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