Phytobacter diazotrophicus: HHA33_23395
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Entry
HHA33_23395 CDS
T06586
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz03030
DNA replication
pdz03430
Mismatch repair
pdz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HHA33_23395 (dnaE)
03430 Mismatch repair
HHA33_23395 (dnaE)
03440 Homologous recombination
HHA33_23395 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdz03032
]
HHA33_23395 (dnaE)
03400 DNA repair and recombination proteins [BR:
pdz03400
]
HHA33_23395 (dnaE)
Enzymes [BR:
pdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HHA33_23395 (dnaE)
DNA replication proteins [BR:
pdz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HHA33_23395 (dnaE)
DNA repair and recombination proteins [BR:
pdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HHA33_23395 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QJF19305
LinkDB
All DBs
Position
complement(4926182..4929664)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGA
GLKPIVGADFHVQSELLADELTQLTVLAANNVGYQNLTLLISRAYQRGYGAAGPWIDRDW
LVELKDGLILLSGARMGDVGKSLMRGNSALVEQCVAFYEEHFPNNYYLELIRTGRADEEN
YLHAAVRLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RSEDEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVAKSKEGL
EERLAFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQVEQSYASCQPWPEQVVLDGERETLGLY
LTGHPITQYLKEIDRYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctgcgggtgcatagcgactactccatgatagacggg
ctggcgaaaaccgggccgctggtgaaaaaggcggccgcgctcggcatgccagcgctggcg
atcaccgattttaccaacctgtgtggcctggtgaagttctacggaacggcccatggcgcg
gggttaaaaccgattgtgggggccgattttcatgttcagagcgaactactcgcggacgaa
ctgacgcagctcactgtactggcagcaaacaacgtcggctatcaaaacctgacgctgcta
atttctcgtgcctatcagcgtgggtacggggcggcggggccatggattgaccgcgactgg
ctggttgagctgaaagacgggctgatcctgttgtctggtgcccggatgggggatgttggt
aaaagcctgatgcgcggtaatagcgcgctggtcgagcagtgcgtggcgttttacgaagag
catttccccaacaactattatctcgaactgattcgtaccggtcgcgcggacgaagagaac
tatttgcatgcggcggtacggctcgccgaagaacgcggtctgcctgttgtggcgaccaat
gacgtgcgttttatcgatgcgggcgactttgatgcccatgaaatccgtgtcgcgattcac
gacggctttacccttgatgaccccaagcgtccgcgtaattactctgcgcagcaatatatg
cgcagcgaagacgagatgtgtgagcttttctctgacatcccggaagcgctcgaaaacacg
gtagaaatcgccaaacgttgtaacgtcacggtgcgtctgggcgaatacttcctgccccag
ttcccgaccggggatatgaccaccgaagattttcttgtcgcgaagtcgaaagaggggctg
gaagagcgcctggcattccttttcccggatgaggcggtccgtaaagagaaacgccctgag
tatgatgaacgtctggatattgaactccaggttattaaccaaatggggttcccgggctac
ttccttatcgttatggaatttatccagtggtcgaaagataacggtgtgccggtaggcccg
gggcgaggctccggtgcgggttcgctggtagcctatgcgctgaaaattaccgacctcgac
ccgctggaattcgacctgctgttcgaacgtttccttaaccctgaacgtgtttctatgccc
gactttgacgtcgacttctgtatggaaaaacgcgatcaggttatcgagcatgtagcagat
atgtacgggcgtgacgcggtatcgcagattattaccttcggtacgatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctggggcatccgtacggttttgtggatcgtatttct
aagctggttccacccgatcctggtatgacgttggcgaaagcctttgaagcggaaccgcaa
ctgccagaaatctacgaggctgacgaggaagtcagagcgctaattgatatggcgcgtaag
ctggaaggcgtcacgcgtaacgccggtaaacacgccggtggtgtggttatcgcgccgacc
aaaatcaccgattttgcaccgctctattgtgatgaagcggggcaacatccggtcacccag
tttgataagaacgacgtggaatacgcgggtctcgtgaagtttgacttcctggggctgcgt
acgctcaccatcatcaactgggcgctggagatgatcaacgcccgccgagagaagaacggc
gagccaccgcttgatatcgccgctatcccgcttgatgacaagaaaagcttcgacatgctg
cagcgctcggaaaccacagcggtattccagcttgaatcccgcggcatgaaagacttgatc
aagcgtctgcagcctgactgcttcgaagatatgatagccctggtggccctgttccgtccg
ggcccactgcaatcgggaatggtggataactttatcgaccgtaagcacgggcgcgaagag
atttcctacccggacgtacagtggcagcatgagagtctgaaaccggtactggagccgacc
tacggcatcatcttgtatcaggaacaggtgatgcagatagcccaggtgctttctggctat
accctcggcggcgcggacatgctgcgtcgtgcgatgggtaagaaaaagccggaggagatg
gccaagcagcgcgggaccttcgaagaaggggcgaagaaaaacggcgttgacggcgagctg
gcgatgaaaatcttcgacctggtggagaaattcgccgggtacggatttaacaaatcgcac
tctgctgcctatgctttagtctcatatcagacgctgtggctgaaagcgcactatccggca
gagtttatggcggcggtaatgaccgccgatatggacaacaccgagaaggtggtaggcctg
gtggacgaatgctggcgcatggggctcaagatcctgccgccggatatcaactctggtctg
taccatttccacgtgaatgacgacggtgaaattgtttacggcattggggctatcaaaggc
gtgggtgaaggcccgattgaagcgatcctcgaggctcgtaataacggcggctatttccgg
gagctgtttgatctctgtgcccgtaccgacaccaaaaaactcaatcgccgggtgctggaa
aaactgataatgtccggggcgtttgaccgccttgggccgcatcgggccgcgctgatgaat
tccctcggcgacgccctgaaagccgccgaccagcatgcgaaagcggaagccattggtcag
gcggatatgttcggtgtcctggcagaagagcccgaacaggtggaacagtcttacgccagt
tgccagccgtggccagagcaggtggtgctggacggtgaacgtgaaaccctggggctgtac
ctgaccgggcatccgatcacccagtatttaaaagagatcgatcgttacgtcggtggctac
cgactaaaagacatgcacccgaccgaacgtggcaaggtcaccacggcggcggggctggtg
attgctgcgcgggttatggtcaccaagcgcggcaatcgtattggcatctgtactttggat
gaccgttccgggcgcctggaagtgatgttgttcacggacgccctggacaaatatcagcaa
ctgctggaaaaagaccgcatactgatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgcgaagtgatggacattgacgaagctcgtgaaaaatat
gcgcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttgaaccga
ctccgtcagtctctggaaccccatcgctcggggaccattccagtacatctctactatcag
agggcggatgcacgtgcacgattacgtttcggcgcaacgtggcgtgtctctccgagcgat
cgtttattaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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