Pseudoalteromonas espejiana: PESP_a0149
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Entry
PESP_a0149 CDS
T04989
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03420
Nucleotide excision repair
pea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PESP_a0149 (uvrD)
03430 Mismatch repair
PESP_a0149 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a0149 (uvrD)
Enzymes [BR:
pea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PESP_a0149 (uvrD)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PESP_a0149 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PESP_a0149 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
ASM48427
LinkDB
All DBs
Position
I:complement(141590..143755)
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRTRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTQ
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIKNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRAAGAVSKFVELVEHIEDKISDLTLHEQAK
YAIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAVFEESGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaattactcgatggcttaaatgacaaacaacgcgatgccgttgcagcc
ccactacaaaacatgctggtattagcaggtgctgggtctggtaaaacacgagtgctggtt
catcgtattgcgtggttaatgcaggttgagcaggcctctgcttatagtatttttgcggtt
acttttaccaataaagcagctaaagaaatgcgcacgcgagtagaagagaccttaaaagca
ccggtcggtggtatgtggattggtactttccatggcttatcgcaccgtattttgcgcgct
catcaccgagaagccaacctgccagaagcctttcaaatattagattctgacgatcagcta
agaatgatcaagcgcttattaaaatcaatgaatattgatgataaaaagtggccagctaaa
caatttggctggtacataagcgctaaaaaagacgaagcacttcgccctaaagatattcaa
gcctacgatataaacgaacaaatgatgctgcgtgtatatgccgcgtatcaagaagcgtgt
gaccgcgcgggtttagtcgattttgctgaaatactattgcgtagctatgaggtgctcaaa
aataaccctacactgcttcgccattaccaacagcgctttgcgcacatgctggtagacgag
tttcaagataccaataccattcaatacgcatggttaaagctgctcgcaggcgatacacaa
agcattatgattgtgggcgacgacgaccaaagtatttatggctggcgcggcgctaaaata
gaaaatataaaacgctttttaactgactttgacgccgaaactattcgccttgagcaaaac
taccgctcaaccgcgactattctaaaagcatctaatgcgcttataaaaaacaactcagag
cgcatgggtaaaagcttatggaccgatggtaatgaaggcgaacctatttctatttatgct
gcgtttaacgaattagacgaagcccgctttgtaagcagtaaattacgtagctggttaaat
gccggtaatgcgttgcaagacgccgccattttataccgtagcaacgcgcaatctcgtgta
ctcgaagaagccatgctacaagaaggcttaaagtaccgtatttacggtggtatgcgattc
ttcgagcgtcaagaaattaaagatgcactatcgtacttacgcttagtaggtaatcgccaa
gacgacgctgcatttgagcgtgttattaacacccctgcccgtggtattggtgataaaaca
ttaagtcatatacgcgactgcgcacgtgctgagtcactcccgctttggtacgcagctaaa
gctattgttgaacaacaacacttatctggccgcgccgcaggtgcagtatctaaatttgta
gagctggttgagcacatagaagacaaaattagcgaccttacattgcacgagcaagctaaa
tacgctattcaaacctctggccttatggctatgtaccaagctgaaaaaggcgaaaaaggc
cgtgcccgcgtagaaaacttagaagagcttatcagtgcctgcgatcagtacgagctccct
gaggaagaagagtttagttcgccactacaagggtttttagcttatacatcgcttgaatct
ggtgaaggccaagccgatgagcacgaagacgcggtgcaaatgatgacgcttcactcagcc
aaaggcttagagtttccacttgtgtttatggtgggtgttgaagagggcatgttcccttcg
cagcaaagtaatgaagagtctggccgcttagaagaagagcgccgcctttgttacgtaggc
atgacccgcgcaatggataaattatatattagccacgccgaaagccgtcgtttatacggg
caagaaaaataccacagcccttcacgctttttacgtgaaataccagaagactgcgttgaa
gaaattcgtattaaaacgcaagtgtcgcgcccgcctgctgcggggcgttttagtgcatca
gtcagccatgctgtatttgaagaaagtggctttaacttaggccagcgcgtactacacgct
aagtttggtatagggactgtacttaattacgaaggtagcggcgcgcaatcacgagtgcag
gtaaactttgatgaccttggcagtaaatggctagtaaccgcgtatgcacgacttcaagct
gtataa
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