Pseudoalteromonas espejiana: PESP_a0297
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Entry
PESP_a0297 CDS
T04989
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PESP_a0297 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pea03021
]
PESP_a0297 (rpoC)
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a0297 (rpoC)
Enzymes [BR:
pea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PESP_a0297 (rpoC)
Transcription machinery [BR:
pea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PESP_a0297 (rpoC)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PESP_a0297 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ASM48562
LinkDB
All DBs
Position
I:287109..291281
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPENGEPIIVPSQDVVLGLYYMTRDRINAKGEGIVFKDPKEAEKAYRSG
NAELHARVKVRISQSVKNEVGEVEDTITLIDTTVGRAILSLILPKGMPFESINQALGKKQ
ISGLLNECYRRLGLKDTVVFADQVMYTGFHYAMKSGVSIGIDDLVIPPVKASIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEEEQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEPVVIPNTNTVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCAKCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTDGTLKL
HNAKYVLNTDGKIVITSRSTEITIIDSFGREKERYKVPYGAVLTVQDNAEVQGNDIVATW
DPHSHPIVLEHKSKISFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNAKEPKLIIESEER
GLQETRLPSFTTIEVTDGVTANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTISFGKETKGKKRLVITPAEGDHYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTILDGGDTEFL
AGEQIEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRMARRKQGEVVEEQTVSAEEATQALTD
ALNADLSGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgatggcttattctgtgcccgt
attttcggcccagtgaaagattatgagtgtttatgtggtaaatataaacgccttaaacac
cgtggtgtgatctgtgagaagtgtggcgttgaagttacacttactaaagtgcgtcgtgat
cgtatgggtcatatcgaccttgcgagcccagtagcacatatatggtttttaaaatcatta
ccgtcacgtattggcttaatgcttgatatgacgcttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgagcctggtatgacaacgcttgagcgtggtcagctatta
ggtgaagaagaatacctagatgcactagaagagcacggtgatgagtttgaagctaagatg
ggtgcagaagcagtattagacttgcttcgtgaacttgatcttggccaactaattgctgag
atgcgtgaagagttacctacaattaactctgaaactaagcgtaaaaagattactaaacgt
cttaagttaatggaatcgttccaccaatcaggtaataaccctgagtggatgatcatgaca
gtacttccagtattgccaccagatctacgtccattagtaccactagacggtggtcgtttt
gcgacatctgatctaaacgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctattagatttagcagctccagacattattgtacgcaacgaaaaacgtatgttacaa
gaagcggttgatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtagattactctggtcgttctgtaatcactgttggtcctaca
cttaagcttcaccaatgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctatggcaaattagagcgtcgtggcatggctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaagtagcggaagtatgggatgtactagacgaagtaattcgtgaacatcca
gtattacttaaccgtgcacctacacttcaccgtttaggtatccaagcgttcgaacctgta
ctaattgaaggtaaagcaatccatttacacccattagtatgtgcggcttacaacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacgcttgaagctcagttagaagct
cgtgcactaatgatgtctactaacaacattctatctcctgagaatggtgagccaatcatc
gttccttcacaggatgttgtattaggtctttactacatgacgcgcgatcgcattaatgcg
aaaggcgaaggcattgtatttaaagatcctaaagaagcagaaaaagcataccgtagtggt
aatgcagaacttcacgctcgcgtaaaagttcgtattagccaatcagttaaaaatgaagta
ggcgaagtagaagatactattacgcttatcgatactactgttggtcgtgcaattctgtct
ctaattttacctaaaggcatgccgtttgagtcaatcaaccaagcattaggtaaaaagcag
atttctggcttattaaacgagtgttaccgtcgtctaggtcttaaagacacagttgtgttt
gctgaccaagttatgtacaccggtttccactacgcaatgaagtcaggtgtttcaattggt
atcgatgacttagttatcccgccagttaaagcatcaataattgaatcagctgaagctgaa
gttactgaaatcaaccaacaattccaatcaggtcttgtaacggctggcgaaaagtacaat
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgaaatgatggccaac
ttgtcaaaagacacggttatcaatgctaaaggtgaagaagaagagcaaccgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgccgctcagatccgtcagcta
gcaggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacgccaatcacg
gctaacttccgtgaaggtctaaacgtacttcagtacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagctaactcaggttacctaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaacgaagacgactgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgacgttgtagaagcacttcgtgaacgtgtacta
ggtcgtgttgtagctgagcctgttgttatccctaatactaatactgtattagttgaacgt
aacatcatgcttgatgaaaaactgtgtgaccttttagaagagcactcagtagatgaagtt
cgcgtacgttctgttatcacatgtgataacgattttggtgtatgtgctaagtgttatggt
cgtgaccttgcacgtggtcatatcatcaacgcaggtgaatcagtaggtgttatcgcggca
cagtcaatcggtgagccgggtacacagcttacgatgcgtacgttccatatcggtggtgcg
gcatcaagagcatcagctgaaaacaacgtacaagttaaaactgacggtactttaaaatta
cataacgctaagtatgtacttaataccgacggtaagattgtaattacttcacgttcaact
gaaatcactatcattgatagcttcggtcgtgaaaaagagcgttataaagtaccttacggt
gcggtattaacagtgcaagacaatgcagaagttcaaggtaacgatattgttgctacttgg
gacccgcatagtcacccaatcgttcttgagcataaatcaaagatctcgttcagcgacatc
gatgattcaaatacagaagcacaaactgacgaactaaccggtttaacccgcgtagttgtt
aaagaccttgctaaagtaaatgctaaagagcctaagcttatcatcgaaagtgaagagcgc
ggcttgcaagaaacacgtctgccttcattcactacgattgaagttacagatggcgttaca
gcaaacccaggtgacgtactagcacgtattccgcaagaaggttcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgacttatttgaagcacgtaagccaaaagatccagct
atcttagctgaaatcacaggtactattagcttcggtaaagagactaaaggtaagaagcgt
ttagttattactccagctgaaggcgatcattacgaagaaatgattcctaagtggcgtcaa
cttaacgtgtttgaaggtgagcaagtgtctaaaggtgaagttatcgccgatggtcctgaa
tcaccacatgacatcttacgcctacgtggtgtgactcatgttgctaactacattgttaac
gaagtgcaagaggtttaccgtttgcagggcgttaagatcaatgataagcacattgaaact
attattcgtcaaatgctacgtaaatgtaccattcttgacggcggtgatactgagttctta
gcgggtgagcaaattgaagtagctcgcgttaatatcgctaatcgtgaccttgaaaaacaa
ggtaaaatcccagctaagtttgaaatacaacttatgggtatcacgaaagcatcactagca
acagaatctttcatctcggcagcgtctttccaagaaacaacacgtgttcttacagatgca
gctgtgaatggtaagagcgatgagcttcgtggtctgaaagaaaacgtaatcgtgggtcgt
ttgatcccagccggtactggctttgcgtatcaccaagaccgtatggctcgccgcaagcag
ggtgaagttgttgaagagcaaactgtaagtgcagaagaggcaactcaagcattaacagac
gctctgaacgcagatttatctggaaatcaataa
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