Pseudoalteromonas espejiana: PESP_a1554
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Entry
PESP_a1554 CDS
T04989
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PESP_a1554 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a1554 (mfd)
Enzymes [BR:
pea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PESP_a1554 (mfd)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PESP_a1554 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASM49655
LinkDB
All DBs
Position
I:complement(1496947..1500420)
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AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLTGSGLSIAIAEGVKQQNDLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRT
APASFIYGSTLNFKVGDKLDTHNLRSNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSV
HPFRLDFFDDELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADVERFRINYRDKFGA
SSEQDSVYMQVSKGTWPAGIEYYMPLFFDGLATIFDYLPNTTTVMQLGDLEHAADTFWHD
VNVRYENRKVDPLRPLLAPSELYQPLNELFSNLGEFARIRLSQAKLPTKAGNKNLNVNEL
PAVRIDHKQHEPYGAFIEYVAAQKKKKSRILLSVESDGRRESLLGVLKPSGLKFKEFENL
TQFTQSQSDVGLIVSPLEQSVVLGSKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPIVHLDHGVGRYQGLQTIDAAGVITEFVTITYAGEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFALDGQSYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKLAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAVLVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMADGKLDIVIGTH
KLIQQDIKFSDLGLLIVDEEHRFGVRQKEKIKSLRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDSDLIREAILREIKRGGQVYFLHNNVETIERVSQEISE
WVPEASVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDAKALSKDATKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALKNGKEPTLENLLQQQTEVDLKLPAL
LPDDYIHDVNARLGMYKRIASCANLADMDELQVELIDRFGLLPDATKNLFSMQQLKMRAS
DLGITKIEANPKGGYFEFSQTTKVNPSFIIGLIQSAPHVYKMDGANKLRFAINEVNPRER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcaa
tgggggcagctaactggtagtggtttaagtattgccattgcagaaggtgttaaacaacaa
aacgatttagtgctcattgttacgccggatacgccaagtgcgcttcgtcttgaaaccgag
ctcgagtacttactacccgataaccctgttatggtttttcctgattgggaaaccctaccg
tacgaccatttctctcctcatcaagatattatttcagcgcgcttagccacacttaacacg
ttaaaaaacgagcaacaaagtgtactaattgtaccggtatcaacattgatgctacgtaca
gcccctgcttcgtttatatacggctctacccttaattttaaagtaggcgataagctagac
acccataacttgcgcagtaacttagaacaagcgggttatttaaacgttcagcaagtaatg
gagcatggcgaatacgccatacgtggctctattgttgatttatacccaatgggcagtgta
cacccatttaggctcgacttttttgatgatgagctcgactcaattcgcttatttgatgta
gaaactcaacgttctgatgaaaaagtagataaaattgagctacttcctgcgcatgagttt
ccaaccaacgaagctgacgttgagcgttttagaataaattatcgcgataaatttggcgca
agttcagagcaagactctgtatacatgcaagtaagtaaaggcacgtggcctgcgggtatt
gaatactatatgccgctgttttttgatggacttgccaccatttttgattacttgccaaac
accacaacagtaatgcagctaggtgatttagagcacgccgctgataccttttggcacgat
gtaaacgtacgctacgaaaaccgtaaagtagacccactacgcccactattagcgcctagt
gagttatatcaacctttaaacgagctattttctaatttaggtgaatttgcacgtattcgt
ttatcgcaagctaaattacccactaaagcgggtaataaaaacttaaatgtaaacgagctc
ccagctgtaagaatcgatcataaacaacacgaaccctatggcgcgtttatagaatatgtt
gcagcgcaaaaaaagaaaaaaagccgcatattactcagtgttgagtctgatggccgacgc
gaatcattattaggtgtacttaaacctagcggcttaaaatttaaagagtttgaaaattta
actcagtttacccaaagccaaagcgatgtaggtctaattgtaagcccgcttgagcaaagc
gtggtattaggcagtaagccgagcctgtctataattactgagcaagaactgcttggcatt
aaagtatcgcagcgcaggcgccgtaaacataaatacgaagccagccaagatgcgcttata
cgtaacttagccgagcttaaagaaggccagccaattgtacacctcgatcacggcgtgggt
cgttaccaagggctacaaacaatcgatgccgccggtgtaattactgaatttgtaaccata
acgtacgcaggtgaagcaaagctgtatgtgccggtatcggcgctgcacatgcttagccgt
tattctggcggtgaagaagcaagcgcaccactacataaactgggttcagacgcctgggaa
aaagctaaaaaacgcgccgccgaaaaagtacgcgacgtagccgcagaactattagatatt
tacgcacagcgccaagcaaagccgggtaataaatttgcacttgatggccaaagctaccgt
caatttagcgacagcttcccgtttgaagaaaccgacgatcaacgtaatgcaatagaagcc
gtccttggcgatatgcaatcaaagctcgcaatggaccgtttagtgtgtggtgatgtaggc
tttggtaaaacagaagttgccatgcgcgccgcatttgtagcggttaacgataataaacaa
gtagccgtgttagtacccactacactacttgctcagcaacactatgaaaactttaaagac
cgctttgccgatttccctatcgaagtgggcgtgctttcgcgctttaactcaactaaagag
caaaaagacaccctagaaaaaatggccgatggtaagctcgatatcgtcattggtactcat
aaactcatacaacaagatattaaatttagtgatttaggtttactgattgttgatgaagaa
caccgctttggcgttcgccaaaaagagaaaataaagtcgctgcgtgccgatgtagatatt
ttaacgcttaccgctacgcctattccgcgcacattaaacatggccatgagcggcatgcgc
gatttatcgattattgctaccccaccggctaagcgtttagcggttaaaacctttgtacgc
caacgagatagtgatttaattcgcgaagccatactgcgtgaaataaaacgcggcggccaa
gtttactttttacataacaatgtagaaaccattgagcgcgtatcgcaagaaattagcgaa
tgggtgccagaggccagtgttacctctgcgcacgggcaaatgcgcgagcaagagcttgag
caaataatgactgacttttaccatcaaaagtacaacgtactggtatgtaccaccattatt
gaaaccggtattgatgtacccactgcaaataccattattatggacagagccgataaactt
ggccttgcacagttacaccaattacgtgggcgtgtaggacgtagccaccatcaagcgtac
gcataccttttaaccggcgatgctaaagcgctttctaaagatgccactaaacgcttacag
gccatagaatcacttgaagatttaggtgcaggctttgcccttgcgacccacgatttagaa
atacgtggtgccggtgagctattaggtgatgaccaatcagggcaaatgcaaaccattggt
tttagtttgtacatggaaatgctagagcaagcggttaatgcgcttaaaaatggcaaagag
ccaacgcttgaaaacctgcttcagcaacaaaccgaagtagacttaaaactcccagcctta
ttgcctgatgattacatacacgatgttaatgcacgtttaggtatgtacaagcgtatagca
agttgtgctaaccttgccgatatggatgagctacaagtagagctaatagatcgttttggt
ttattacccgatgccactaaaaacctatttagcatgcagcaacttaaaatgcgcgccagc
gatttaggcattacaaaaatagaggcaaatcctaaaggaggctactttgaatttagccaa
accactaaggttaatcctagcttcatcataggcttgatacaaagtgcaccccatgtgtac
aaaatggatggcgcaaataaattgcgctttgcaattaatgaggtaaaccctcgtgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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