Pseudoalteromonas espejiana: PESP_a1576
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Entry
PESP_a1576 CDS
T04989
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PESP_a1576 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pea03019
]
PESP_a1576 (rne)
03009 Ribosome biogenesis [BR:
pea03009
]
PESP_a1576 (rne)
Enzymes [BR:
pea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PESP_a1576 (rne)
Messenger RNA biogenesis [BR:
pea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PESP_a1576 (rne)
Ribosome biogenesis [BR:
pea03009
]
Prokaryotic type
rRNA processing factors
PESP_a1576 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASM49674
LinkDB
All DBs
Position
I:complement(1519147..1522380)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTDLKEALSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWDAIQQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYEQVVAPEPESFEMAKPASTPVREEPMLKGVVMPSTPAPQAKV
DKPAAPVAVPKVEGGLLAAIGNWFKSLFAGESEEEKQAKEKAEQEKQQQTRNNNRRGNND
NRRRNNNQRRRNNPRSKPRADRNNEEEVKTDSPVTTENQEKNENRNKRRRNPNSRKRNDN
RNNENRNADKEQVKTDVKAAETDTKQNAEPKEQKPKVRRQRRNVRKKVRVQDENAEQVSA
TTASEQADTAKVEQPKAPVAKQAPTEQKVEQEKPAPQKQPAPVKEQAVDTKAELDEKPVD
ANTTDEATSDDDQGQTRTRSRRSPRHLRASGQRRRRPEQGEATEEKSDEAPAFVPVADQA
AAEYEAELKAKAEQPTSNDASENVEQAIAAEDLAKVEMEPATEQPSQSDETVKTVDPVTA
EEPVVVTEQPIAAPEPEVTPESVKVEPEVAEQPVTPEPVKAEPEVAEQSVTPEPVKAEPE
VTEKPVTPEPVKAETEVTEQPVTPEPVKAETEQKVAEQVETVSAPAKDANAKTVITKGAA
SAPMAQPTPVADSEVKHTSVAMAHDKRELVPDSGLRAGSIKPAGRASSAMTKTLSAE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcacacgcattgaaccatctttagaggccgcttttgtagattac
ggcgccgatcgtcatggtttccttcctttaaaagaaattgcccgtacttacttcccgcaa
ggttatacttttcatggtcgcccaaatattcgcgacgtgattaaagaaggccaagaagtt
attgtacaagttgataaagaagagcgcggccaaaaaggcgctgctttaactacttttatc
agcgtagcgggtagctacttagtactaatgccaaataacccgcgtgccggtggtatttct
cgccgtattgaaggcgatgaacgtaccgaccttaaagaagcactaagccgcctagaactt
cctaaaggcatgggtttaattgtacgtaccgctggtgttggcaaatcgtttgaagagtta
aactacgatttaaaagcgcttttagtacattgggatgcaattcaacaagcagccgacagt
gctaaagccccgtttttaattcaccaagaaagcaatgtaattttccgcgcaattcgcgat
tatttacgtcgtgatattggcgaaattttaattgataaaccacgtgtatttgaagaagca
aaagcgcacattgagcgttttcgccctgacttcatgagccgtgtaaagctttatcaaggc
gacaccccattatttacgcactaccaaattgaaagccaaattgagtctgcgttccaacgt
gaagtacgtttgccttcaggtggttcaattgtaattgatccaaccgaagcgcttacctct
atcgatatcaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcacttaat
actaacctagaagccgctgatgaaattgcgcgtcaactacgtttgcgtgacttaggtggt
ttaatcgttatcgactttatcgacatgacgcctccgcgccaccaacgtgaagttgaaaac
cgtttaaaagatgctgctcgaccagatcgtgctcgcgtacaaattggtaaaatctctcgc
tttggcttattagaaatgtcgcgccagcgtttgcgcccttcactaggtgaagcaagccaa
ggcccatgtccgcgttgtagcggccaaggtactattcgttctaacgagtctattgcactt
tctattcttcgtttaattgaagaagaagcaattaaagacaacacagcacaagttaacgct
caagtgcctgtagctgtagctgcttatttgctaaatgaacaacgtagaagtgttcaccgc
attgaaaaacaccacaagtgtgatgtggttattattcctaatcaacacatggaaacacca
cactacgaagtaatgcgtttgcgtaaagatgaaacgcttgaaaccgtaagctacgagcaa
gttgttgcacctgagcctgagtcgtttgagatggcaaagcccgcctctacaccagtacgc
gaagaaccaatgctaaaaggcgtagtaatgccttcaacgccagcgccacaagctaaagta
gacaagccagcagctcctgttgcagtacctaaagttgaaggtggcttactagccgctatt
ggtaattggtttaagtctttatttgctggtgaaagcgaagaagaaaaacaagccaaagaa
aaagctgagcaagaaaagcaacagcaaacacgcaataataatcgccgtggtaacaacgac
aaccgtcgtcgtaataacaaccagcgtcgtcgcaataacccgcgttctaaaccgcgtgcc
gatcgtaacaacgaagaagaagttaaaacagattctccagtaacgaccgaaaaccaagag
aagaacgagaaccgcaataagcgtcgccgtaaccctaactcgcgcaagcgtaacgataat
cgtaataacgaaaaccgtaacgccgacaaagagcaagttaaaactgacgtaaaagcagct
gagactgatacaaagcaaaatgcagaacctaaagagcaaaaacctaaggttcgtcgtcaa
cgtcgtaatgttcgtaagaaagtacgcgtgcaagatgaaaatgcagagcaagtatcagca
acaactgcctcagaacaagcagacactgcaaaagtagagcagcctaaagcgccagtagct
aagcaagcacctacagagcaaaaagtagagcaagaaaaaccggctccacaaaagcaacca
gcgcctgtcaaagagcaagcggttgatactaaagctgagcttgatgaaaaaccggttgat
gcaaacactactgacgaagcaacaagtgatgatgaccaaggtcaaacgcgtactcgttca
cgccgttcacctcgtcatcttagagcatctggtcagcgtcgtcgtcgcccagagcaaggt
gaagcaacagaagagaaatctgatgaagcaccagcgtttgtgccagtagctgaccaagct
gctgcagagtacgaagctgagttgaaagcaaaagctgaacagcctacatcaaatgatgcc
tctgaaaatgttgagcaagcaattgctgctgaagatttggctaaagttgaaatggagcct
gcaacagagcaaccttctcaaagcgatgaaacagtaaaaactgtagacccagttacagct
gaagagccagttgtagtaactgaacaacctatcgctgcacctgagcctgaagttacccct
gagtctgttaaagtagaacctgaagtagctgagcaaccagtaacaccagagcctgtaaaa
gcagagcctgaagtagctgagcaatcagtaacaccagagcctgtaaaagcagaacctgaa
gtaactgagaaaccagtaactccagagcctgttaaagcagaaactgaagtaactgagcaa
ccagtaactccagagcctgttaaagcagaaactgagcaaaaagtagctgagcaagttgag
actgtaagtgcacctgcaaaagatgccaatgcaaaaacggttatcaccaaaggtgcggca
agtgcaccaatggcacaaccgactccagttgcagatagcgaagtaaaacatacttctgtt
gcgatggcgcacgataaacgtgaactagttccagacagtggtttacgtgcaggttcaatt
aaacctgcgggtcgcgcaagctctgcaatgaccaaaacgttgagcgctgagtaa
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