Pseudoalteromonas espejiana: PESP_a1676
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Entry
PESP_a1676 CDS
T04989
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pea
Pseudoalteromonas espejiana
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pea03032
]
PESP_a1676 (topA)
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a1676 (topA)
Enzymes [BR:
pea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PESP_a1676 (topA)
DNA replication proteins [BR:
pea03032
]
Prokaryotic type
DNA Topoisomerases
PESP_a1676 (topA)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PESP_a1676 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Toprim_2
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
ASM49757
LinkDB
All DBs
Position
I:1613159..1615858
Genome browser
AA seq
899 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSIGHVRDLPTSGSSKAKVPATKTPAEVRKME
PEEKAAYKQQRDYTNLVARMGIDPEKGWEPHYEVLPGKEKVVQELKKLAENADQVYLATD
LDREGEAIAWHLQEIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTES
QLRLEVTKQADKPFKPVNEAQAAAAVKTLESAEYKVISVEEKPSKSRPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVEMCRDYVTEEFGAKYLPKDP
ISYSSKGNAQEAHEAIRPSSVTVLSGHVEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAASDFQLKAKGRVLRFDGWTKVQPAVRKKNEEDQSLPAVKEGEVLSLIELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTQVLDKFYDDFSTQLNIAKDEPEQGGMRLNQ
MVETDIDCPTCGRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADVEDIE
TETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACKGHIVEEGTFKIKGYDGPIIECD
KCGSDMELKSGRFGKYFGCNNEECKNTRKLLKNGEAAPPKEDPVHIPELECEKSEAYFVL
RDGAAGIFLAANTFPKSRETRAPKVAELKRFRDRISSKFYYLADAPEKDPDGNLAVVRYS
RKNKAQYVMTEVDSKATGWTAHYEAGKWVEEAKKKAAPKKKAATKKAPAKKTKAKKEEE
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatac
ttaggtaaagacttcatcgtaaagtccagtattggtcacgtacgtgatttacctacctca
ggttcgagcaaagctaaagtgccggcaactaaaacgcctgccgaagttcgtaaaatggaa
cctgaagaaaaagcagcgtataaacagcaacgagattacaccaacttagtagcgcgtatg
ggtatcgatcctgaaaaagggtgggaaccgcattacgaagttttgccaggtaaagaaaaa
gtagttcaagagttaaaaaagctggccgaaaacgcagaccaagtttatctcgcaacggat
ttggatagagaaggggaagctattgcttggcaccttcaagaaatcattggtggcgaacca
gaaaagtataaacgtgtagtttttaacgaaattactaaaaatgctattcagcaagcgttt
gaaacaccgggtgagctaaacaccgatatggtgtacgcacagcaaacgcgtcgcttttta
gaccgtgttgttggttttatggtgtcgcctttgttgtgggcaaaagttgctcgtggtcta
tctgccggtcgagtgcaatcagttgcagtgcgtttgttagtagagcgcgagcgtgaaatt
aaagcgtttattcctgaagaattttgggatatccatgctgatgttaaaaataccgagtct
cagttacgcttagaagtaaccaaacaagcagacaagccatttaagcctgtaaatgaagcg
caggctgctgccgcagttaaaacgcttgagagcgcggaatataaagtaataagtgttgaa
gaaaaaccaagtaaaagccgtccaagcgcaccttttatcacttcaaccatgcaacaagct
gctagcactcgtttagggtatggcgttaaaaagaccatgatgcttgcacagcgtttatac
gaaggtggttacatcacgtatatgcgtaccgactcaactaacctgtcaaaagatgcggtt
gaaatgtgtcgtgactacgttactgaagagtttggtgctaagtacttaccaaaagatcca
attagctatagctctaaaggaaacgcgcaagaagcgcatgaagcgattcgtccttcaagc
gtgactgtgctttcgggccatgttgagggtgtcgatgccgacgctaaaaagctttacgag
ctcatatggcgccaatttgtagcatgccaaatggttcctgcagaatacgacctaacaacg
cttactgttgccgcaagcgacttccagcttaaagcaaaaggtagagtattacgctttgat
ggttggactaaagtacaaccagcagtgcgtaaaaagaatgaagaagatcagtctcttcct
gctgttaaagaaggcgaagtgctaagcttaattgagcttgatcctaagcagcactttact
aaaccgccagcgcgctttagtgaagcaagcttagtaaaagagcttgaaaaacgtggcatt
ggtcgtccatctacgtacgcatcaattatttcaacaattcaagatcgtggctacgtacgt
gtagaaaaccgtcgcttttttgccgaaaaaatgggtgaaatagttaccgaccgtttagta
gaaaacttcactgatttaatgaacttcgattttactgcaaaaatggaagggcgtttagat
gacatcgccgaaggcgagcgcgtttggactcaagtacttgataaattttatgacgatttt
tctacgcaactaaacattgcaaaagacgagccagagcaaggcggtatgcgccttaaccaa
atggtcgaaacggatattgactgcccaacatgtggcagaaaaatgggtattcgtactgca
tctacaggtgtatttttagggtgtacaggttataacctaccacctaaagagcgctgtaca
acaaccatgaaccttgtttcaggtgatgaagcggttgctgcagatgtcgaagacattgaa
actgaaacattaatgcaaatgaagcgttgtccaatttgtgaaacagcgatggactcctac
ttaattgatgaaactcgcaagctacatgtatgtggtaataaccctgcatgtaaagggcat
attgttgaagaaggcacctttaaaataaaaggctacgatggacctattatcgaatgtgat
aaatgtggttctgatatggagcttaaatcgggtcgctttggcaagtactttggctgtaat
aacgaagagtgtaagaacacccgtaagttgcttaaaaatggcgaagctgcgccaccaaaa
gaagatccggttcatatccctgagcttgagtgcgaaaaatcagaagcctattttgtactt
cgcgatggcgcggcaggtatatttttagcggctaatacttttcctaaatcacgagaaaca
cgcgcacctaaagtggcggagttaaagcgttttagagaccgtatttcttctaagttttat
tacttagctgacgcacctgaaaaagatcctgatggaaatttagctgtagtacgttatagc
cgtaaaaataaagcacagtacgttatgaccgaagtggactcaaaagccaccggctggact
gcgcactatgaagcaggtaagtgggtagaagaagcaaagaaaaaagcggcgcctaaaaag
aaggctgctactaaaaaagcgcctgcaaaaaagacaaaagctaaaaaagaagaagagtaa
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