Pseudoalteromonas espejiana: PESP_a2987
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Entry
PESP_a2987 CDS
T04989
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pea
Pseudoalteromonas espejiana
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pea03032
]
PESP_a2987 (topA)
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_a2987 (topA)
Enzymes [BR:
pea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PESP_a2987 (topA)
DNA replication proteins [BR:
pea03032
]
Prokaryotic type
DNA Topoisomerases
PESP_a2987 (topA)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PESP_a2987 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
N_formyltrans_C
Motif
Other DBs
NCBI-ProteinID:
ASM50868
LinkDB
All DBs
Position
I:complement(2893344..2894321)
Genome browser
AA seq
325 aa
AA seq
DB search
MKLIYVDDNLPGISRKLKRKSWLYYDPIGKQIKEQEVIDRLNALAFPPAYKNAWFCPEEN
GHILATGYDSKGRKQYRYHPEFRAQQEAKKYQACGVFGNKLPLLRARLETDLQGDELNVE
RTLAAVVRLMDLGALRVGNERNVKQNKSFGATTLRTRHAKLTGKNIQLQYRAKSGKEREV
NITDRVLSHVIKDLQDLPGQHLFQYISDGERTNVTSSEINQYIQQIMGEEFSAKHFRTWR
ASVIAFKQLFKAKGALTLKSMLDSVSEQLGNTPAIARKSYVHPDLIALCKQDEETQTAWR
ETLSLPRKTKYLSRFERGFLAFLND
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaatttatgttgatgacaacttacccggtatatcccgaaaacttaagcgtaaa
agctggctttactacgaccctataggtaagcaaataaaagagcaggaggttattgataga
ttaaacgccttggcatttccacccgcatataaaaatgcctggttttgccctgaagaaaac
ggccatattttagcaactggttacgatagtaaagggcgaaagcagtatcgttatcaccct
gagtttagagcgcagcaagaggctaaaaaatatcaagcctgtggtgtgtttggaaataaa
ttaccccttttacgtgcacgcttagaaaccgatttacagggcgatgaacttaatgttgaa
cgcactttagctgcagttgttagacttatggatttaggagcgctgcgcgttggaaatgag
cgtaatgtaaaacaaaacaaaagttttggcgccaccacgctgcgtactcgccatgcaaag
ctaacaggtaaaaatatacagctacaataccgtgctaaatcgggtaaagagcgcgaggta
aatattactgatagggtattgagccatgtaattaaagacttacaagacctacctggtcag
cacttgtttcaatacataagtgatggtgagcgtactaatgtaacttccagtgaaattaat
caatacattcaacaaataatgggcgaggaatttagtgcaaagcactttagaacatggcgc
gccagtgttatcgcttttaaacagctttttaaagcaaaaggggcgcttacgttaaaaagt
atgctcgatagcgtgtctgagcagttaggtaatactccggcaattgcgcgtaagtcatat
gtacaccctgatttaatcgcactttgtaagcaagatgaagagactcaaactgcatggcga
gaaacgctctcattaccacgaaaaacaaaataccttagtcgttttgaacgaggcttttta
gcctttttaaacgattaa
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