Pseudoalteromonas espejiana: PESP_a3842
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Entry
PESP_a3842 CDS
T04989
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pea
Pseudoalteromonas espejiana
Pathway
pea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PESP_a3842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pea03019
]
PESP_a3842
Enzymes [BR:
pea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PESP_a3842
Messenger RNA biogenesis [BR:
pea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PESP_a3842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASM51589
LinkDB
All DBs
Position
I:complement(3663295..3664596)
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AA seq
433 aa
AA seq
DB search
MTSATSPSTFNELGLIPELQARLTDLEYNQPTPIQAKAIPSVLAGSDLIAGANTGSGKTA
TFALPMLQKLFVEQSAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVA
VFGGVSVNTQMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTE
ELAELLALMPAKKQTMLFSATFPEQVTQLTQELLTNPVEIQVQSKDESTLVQRVFTVNKG
EKTTVLAHLIKAHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEK
FKAGEIEVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLID
YEDFHHFKIIEKKNKLRLEREEVTGFAVNQANLDAALALKNDKPMAKPEGTGKKKKKKPN
QEDDVWSGWQGRN
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgacctcagccacaagccctagcacctttaacgaacttggccttattccagagctacaa
gctcgtttaaccgatttggaatataaccaacctacgccaattcaagctaaggcgattcca
agtgtacttgctggtagcgatttaattgcgggggctaatactggctcaggtaaaacagca
acgtttgctttacctatgctacaaaagctttttgtagagcaaagcgctaaaaaaacagcg
agcaaaggtaactttgtaactgggcttattttggtacctacccgtgagcttgcaacgcag
gtggccgatagcgttaaatcgtattctgctaactttaatggcgcaattaaaacggtagca
gtatttggtggtgtgtcggttaatacacaaatgcaggctctacgcggcggcgctgatatt
attgttgcaacgccagggcgtttgctcgatttaatctcaagcaatgctattaagctcgat
aaagtaacaaccttagtgcttgatgaagccgaccgcatgttaagccttggctttaccgaa
gagcttgctgagttattagcgttaatgcctgctaaaaaacaaactatgttgttttcagca
accttcccagagcaagtcactcaattaacacaagagctgttaaccaaccctgttgaaata
caagttcaaagcaaagacgaaagcaccttagtacagcgcgtatttacggttaataaaggc
gaaaaaaccacggttttagcgcatttaattaaagcgcataaatggcgccaagcacttatt
tttgtaaacgctaaaaaagactgtgagcacttagcaggtaagcttgaaaagcgtggtatt
aacgcacaggtatttcatggtgataaaggccaaagtgagcgtactcgcgtaatagaaaaa
tttaaagcgggtgaaatagaagtacttattgccaccgatatagcagcccgtggtttagat
attgccaaactgcctgttgttattaactttaacttaccgcgcagccccgctgattacatg
caccgtattggccgaagcggccgtgccggtgaagttggcctagcgttatcgttaattgat
tatgaagactttcatcactttaaaataatcgaaaagaaaaacaaacttcgtttagagcgt
gaggaagtaacgggttttgcggtaaaccaagcaaaccttgatgcggcccttgcacttaaa
aacgataagccaatggcaaagccagaaggcacaggtaagaaaaagaagaaaaaacccaac
caagaagatgacgtatggagcggctggcaaggtcgcaattga
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