Pseudoalteromonas espejiana: PESP_b0167
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Entry
PESP_b0167 CDS
T04989
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pea
Pseudoalteromonas espejiana
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pea03400
]
PESP_b0167 (sbcC)
DNA repair and recombination proteins [BR:
pea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PESP_b0167 (sbcC)
Archaeal homologous recombinant proteins
PESP_b0167 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ASM51778
LinkDB
All DBs
Position
II:complement(133592..137242)
Genome browser
AA seq
1216 aa
AA seq
DB search
MKITAVRIHNLASIVDAEIDFTQAPLKDAGLFAITGDTGAGKSTFLDAICLALYTKTARL
KGDKGNLIDFNGDSIKLNDARNLLRRGKWEGFAEVDFVGQDKQLYRARYSIQRTHKKVTG
KLKVAEHTLVTLPDETLIADKSQTIKEIETKIGLSFEQFSRAVLLAQHEFAAFLKATGDE
RAQLLQCLTGTDKFSLIGKRIFERNKELKDEFDLLQASLASYTLLSEDELAVKHATLNEL
KLQIEDTKKALISTEQNLNWYKQASTLEQALEEATKNQQHANNELAAIAQQSEQAKQAQS
ALEIKDNRKRHGYLTAQNNDLNTQISDLKNIDHAALIEKQAATLKTKQSELTTAQEQKQS
AEPIIAKARELDSQLAIHAQSITSLTQQRDKEQQQLSDLHAQHKQSQTALDEATKLNTQH
QQWLAEHTQLKQLANDWNYYQHSFNQYLSANEQLNVAATQNQALLAEQTKQAELLTAQNK
KVEQQEQQLSHDQKNLNELNEQQRQFNIEQCDSELKNIDYLKEQRIRYTQFTQELKQSTQ
AQNNIAAKLSQSEQQQQSLLQNLAACEQALKHNEYALNQARLRASENVEHLRAQLNPNEP
CVVCGATEHPYATNQNPQLNNLIADFEASYTNAKKQHDSAQTQLHTHQTQHAVLVNEHAQ
HSQTIQTLNAKRSEMKTTMEAARTHLNALTSEQLDETYKQLNEQKAQYFESQKQQNALQA
KVNQQQSSLKAEQQTQQQLHNLNSELINKLSQINTKHTELTSQISELTTALNAQFEHSNF
WQQLQAGSLNLSDLNQQVEQYQQTHAQLEQSQKQIDTANQQLKQLTPLISKSESALKTLK
EDLASAQQLRNTTQSERLALFSNEQISANDYQAKINAQLEQCHTQLNASQQAYDSAVKKR
DEHAIELKNAELRLAEQSTELATLDARYKQWFSDFKAQYSEATHEQITILLTLSSEQIKA
HLTQFEQLSAALLDANAALKQQQSAHTDHQNTNKPSQSHTELSEQLAALNTKQTEQQNSL
LITNTAIEQHNQNAKALEGKQAQLAVLKKQVEQWHLLNKVLGDATGKTMRNLAQTQTLKI
LLHYANSHLKTLNKRYELTAIAQSLDIAIIDRDMADEQRSVNTLSGGESFLVSLALALGL
ASLSSNKVQINSLFIDEGFGTLDSETLSVAMDALDSLQAQGRKVGVISHVSEMSERVATQ
VHVSKQSGGYSTVEVL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaccgcagtacgcatacataacttagcatctattgttgacgccgaaattgac
tttacacaagccccactaaaagatgcaggtttatttgctataaccggcgacaccggtgca
ggtaaaagcacctttttagatgccatttgtttagcgctttacacaaaaacagcgcggcta
aaaggcgataaaggcaacctgattgactttaatggcgacagcataaaattaaacgatgcg
cgtaacttattgcgccgaggaaagtgggaaggcttcgcagaagttgactttgtagggcaa
gacaaacagctttaccgcgcgcgatattcaatccagcgcacccataaaaaagtaacgggt
aaattaaaagtagccgaacatacattagttaccttgcccgatgaaaccctcatagccgac
aaaagccaaaccataaaagaaatagaaaccaaaataggtttaagctttgagcaattctcc
cgtgcggtattattagcgcagcacgagtttgcggcatttttaaaagccacaggcgatgaa
cgcgcgcaattattacaatgccttacgggcaccgataaatttagccttattggtaagcgt
atatttgagcgcaacaaagaactaaaagatgagtttgatttactacaagcaagccttgca
agctataccttattaagtgaagatgaattagcagtaaagcacgccacgcttaatgagcta
aaactgcaaatagaagacactaaaaaagcactaataagcacagagcaaaacctaaactgg
tataagcaagccagtacacttgagcaagctcttgaagaagccacaaaaaatcagcagcat
gcaaacaacgaacttgcagcaattgcacagcaaagtgagcaagcaaaacaagcacaaagc
gcgctagaaataaaagataaccgcaagcgacatgggtatttaacggcgcaaaataacgac
cttaatacacaaataagtgacttaaaaaacattgaccatgcagcgcttatagaaaagcag
gccgcaacacttaaaacaaagcaaagcgaattaacaacagcgcaagagcaaaagcaatct
gctgagcctattattgcaaaagcacgcgagctcgacagccagcttgctatacacgcacaa
agcattactagccttactcagcaacgcgacaaagagcaacagcaattaagtgatttacac
gcgcaacataagcaaagccaaaccgcgcttgatgaagcaactaagctaaacacgcagcat
cagcaatggcttgctgagcatacacagcttaaacagctagccaatgattggaactactac
caacatagctttaatcagtatctaagtgctaatgagcaacttaatgtagcagcaactcaa
aaccaggcgttactagcagagcaaaccaaacaggctgagcttttaacagcgcaaaataaa
aaggtagagcagcaagagcagcaactaagccatgatcaaaaaaacctaaacgagctgaac
gagcaacaacgccaatttaatattgagcaatgcgacagcgagcttaaaaatattgattac
ttaaaagagcagcgaatacgctacacacaatttacccaagagcttaagcaaagcacgcaa
gcgcaaaataacattgcagctaaacttagccaaagtgagcaacagcagcagtcgctttta
caaaacctagcagcgtgcgagcaagcacttaaacataacgaatacgcgctaaaccaagct
cgcctgcgtgccagcgaaaacgtagagcatttgcgcgcacagcttaaccctaacgagccc
tgcgtagtgtgcggtgcaaccgagcacccctatgctactaaccaaaacccgcaattaaac
aacttaatagccgattttgaagccagctatactaatgctaaaaagcagcacgatagtgcc
caaacgcagttacacacgcatcaaacacagcatgccgtactcgttaacgaacacgctcag
catagccaaaccattcaaacgctcaatgctaaacgaagcgaaatgaaaaccaccatggag
gctgcgcgtactcacttaaatgcccttacatcagaacagcttgatgaaacctataaacag
cttaatgagcaaaaagcgcagtattttgaatcgcaaaaacagcaaaatgccctgcaagca
aaagtaaaccagcaacaaagctcactaaaagcagagcaacaaacacaacaacaattgcat
aatttaaatagtgaattaatcaataaactaagccaaataaatacaaaacatactgagcta
acgtcgcaaattagtgagctaactacagcgcttaatgcgcaatttgaacacagcaacttt
tggcagcaactacaagccggctcgcttaacctaagcgatttaaaccagcaggttgagcag
tatcagcaaacacatgcgcaacttgagcaaagccaaaaacaaatagacactgctaatcag
caattgaagcaacttacgccgctaatttctaaaagtgagagtgcacttaaaacactaaaa
gaggatttagccagtgctcagcagctacgaaatacaacacaaagtgagcgccttgcgtta
tttagtaacgaacaaataagcgcaaacgactatcaagcaaaaattaatgcccagcttgag
caatgccatacacagttaaacgcaagccagcaagcttacgatagcgctgttaaaaaacga
gatgagcatgcaattgagcttaaaaacgcagagcttcgcttagccgagcaaagcacagag
cttgcaacccttgatgcgcgttataagcagtggtttagtgactttaaagctcagtacagt
gaggcaacgcatgagcagatcacaattttactaacgttaagtagtgagcaaattaaagcc
catttaacccagtttgagcagctttcagcagcacttttagatgcaaatgctgcgcttaaa
cagcaacaaagtgcgcatacagatcaccaaaatactaacaagccatcacaaagccacact
gaacttagcgagcaattagcggcattaaatacaaagcaaactgagcagcaaaatagttta
cttatcactaataccgccatagaacagcataaccaaaatgccaaagcgcttgaaggcaaa
caagcgcagctagctgtacttaaaaagcaggtagagcaatggcatttattaaataaagta
ttaggcgatgcaaccggtaaaaccatgcgtaacttagcccaaacacaaacgttaaaaata
ttactgcattatgctaacagccatttaaaaacccttaataaacgctacgagctaacagct
attgcgcagtcgctcgatattgccattattgaccgcgacatggccgacgaacaacgctcg
gttaatacgctctctggtggtgagtcatttttagtctcactggcactggcgttagggctt
gcatcgctttcgtcaaacaaagtgcaaatcaactctttgtttattgacgaagggtttggt
acgttagatagcgaaacactcagcgttgctatggacgcgctcgattcattacaagcacaa
ggccgcaaagtaggggttatatcgcatgtgagcgaaatgagcgaacgtgtagccacgcaa
gtacatgtaagtaaacaaagtggtggatactccactgttgaagttttataa
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