Peptostreptococcus equinus: O0R46_00950
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Entry
O0R46_00950 CDS
T08671
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
peb
Peptostreptococcus equinus
Pathway
peb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
peb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O0R46_00950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peb03400
]
O0R46_00950 (mfd)
Enzymes [BR:
peb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O0R46_00950 (mfd)
DNA repair and recombination proteins [BR:
peb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O0R46_00950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WAW15045
LinkDB
All DBs
Position
167120..170518
Genome browser
AA seq
1132 aa
AA seq
DB search
MNDVLVYPLKNSGEYNGILDAINKKEHVQIVGLMQNSRANIGYSIFKDQSKQMLYVASSE
YEAKKIFEELSAYNKSKVEMLPSDNILFYNLDARDRKLDARKLKVYLKLVKREKSIFVTS
VDALSRKYVPKKIILDNVFKLKIGQTMEMDKLSKILVSLGYQRVSKVEGFGQFSIRGGIL
DVFTLLYDFPLRFEFFDDEIDSIREFDIYSQKSISKKTSVTITPSREFIYPDQVEFAVEK
LKSELSDNADPDVLRNIERIESKEYFDGMENYIDYIYGDVDKSLFEFLDEDAIIFIDDFN
RYRERFKNIASEFKENYILNLERGLALKTQGSLLHSLEELNHYIGNRSILMNTLLNKTIN
DMGINRVVSIDSREIPSYNGKIDMLVEELKRLRHSGYKTIIATYSSERAKKISKILIENE
IDNIYTTSRDVEIKSSQIIVVPANISQGFQYPSIKFQIITDKELVGSNKSGVKKKRTKKK
NSSKIESFMDLKVGDYVVHENSGVGKYTGIEQISVDGIKRDYLKVMYNGGDSLYVPIDQM
DKVQKYIGGDVEKVKLNKLGTQEWSKAKNKVKKEIEDMTKELVELYAKREKRKGYKFSKD
TVWQNEFEDKFPFTETDDQLKAIKETKKDMESVKAMDRLVCGDVGYGKTEVAIRAIFKAV
MDGKQVAVLVPTTILAQQHYNTFVERFEDYPIRVEVLSRFRTAKQQKQIVEDAKKGLVDV
LIGTHRIVSKDIDLSKLGLVVVDEEQRFGVKHKEALKKLKVDVDVLTLSATPIPRTLHMS
LSGIRDMSIIEEPPQERYPVLTYVTEAKDSIIQDEILRELDRQGQVFFVYNRVEGIEQMA
SRIKKLVPDARVGVAHGRMTSSQLENTVLSFLAKEFDVLVCTTIIETGMDIANANTIIIY
DADKMGLSQLYQLRGRVGRSTKQGYAYLMYERNKVLSEVAEKRLKAIKEFTEFGSGFKVA
MRDLEIRGAGDVLGSQQHGHMAVIGYELYVKMLNEAISKIKGEVLIEDTDVELDLSVNAF
IPSSYIEDEILKLEMYKKIATIDSKEDMYEIQEELEDRFSNIPKETQTLLNIAYIKSLCK
RLKINKVKQNGKEINLEPLTKYISSESNGYDIVMELEVMLEGFIKNKENTKN
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtattggtatatccattgaaaaacagtggtgaatataatggtatactggat
gctattaataaaaaagaacatgttcagatagtaggcttaatgcaaaatagtagggctaat
ataggctattctatatttaaagatcaatcaaaacagatgctttatgtagcaagtagcgaa
tatgaagctaaaaagatttttgaggaattaagtgcttataataagtcaaaagtagaaatg
ttaccatcagacaatattcttttttataatttggatgcaagagacagaaaattagatgct
agaaaattaaaagtatatttgaaattagtaaaaagagaaaagtcaatatttgttacatct
gtggatgcattgtctagaaagtatgttccaaagaaaataatattagacaatgtttttaaa
ttaaaaattgggcagactatggagatggataaattgagtaaaattctcgttagtttgggt
taccagagagttagcaaggtagaaggctttggtcaatttagtatcagaggtgggatttta
gatgtatttacattactatatgattttccattgcgatttgaattttttgatgatgagatt
gattctattagagagtttgatatttattcacaaaaatcgatatcaaagaaaacttctgtg
acaattacaccatctagagaatttatatatccagatcaagttgagtttgcagtagagaaa
ttaaaaagtgaattaagtgataatgcagatccagatgttcttagaaatattgaaagaatc
gagtcaaaagaatattttgatggaatggaaaattatatagattatatatatggtgatgtt
gataaatccttatttgaatttttagatgaagatgccataatatttattgatgatttcaat
agatatagggaaaggtttaaaaatattgcttctgaatttaaagaaaattatattttaaat
ttagaaagaggattagcattaaaaactcaaggtagtttacttcattcattggaggaatta
aaccactatattggcaatagaagcatattaatgaatacattgctaaataagaccattaat
gatatgggaataaatagggttgtatctatagattctagagaaataccaagctataatggt
aaaattgatatgctagttgaagagttaaaaagacttagacattcaggatataagactata
atagctacatattctagtgaaagagcaaaaaagataagtaagatattaatagaaaatgaa
atagataatatatatactaccagtagagatgtagaaataaaaagttctcaaataatagtg
gtaccagctaatataagtcaaggttttcaatatccttcgataaaatttcaaataattacg
gataaggaattggttggttcaaacaagtctggtgtgaagaaaaagagaaccaaaaagaaa
aattcttcaaagatagaatcctttatggatttaaaggtaggcgactatgtagttcatgag
aatagtggtgttggtaaatatactggcatagaacaaataagtgttgatggaataaaaaga
gactatttaaaagttatgtataatggcggtgatagtctatatgtacctatagatcaaatg
gataaagtccaaaaatatataggtggagatgtagaaaaagtaaaattaaataaattaggt
acacaggaatggtcaaaagcaaagaataaggttaaaaaagagatagaagatatgaccaag
gaactagtagagctatacgccaaaagagaaaagagaaaaggatataaattctctaaagat
actgtttggcaaaatgaatttgaagataagtttccatttacagagactgatgaccagtta
aaggctataaaagagactaaaaaagatatggaatctgtaaaggcaatggacagattagta
tgtggagatgttggttacggaaaaacagaagtagccataagagctatatttaaagctgtt
atggatggtaagcaagtagctgtattagtgcctactacaatattagctcaacagcactat
aacacttttgtggaaagatttgaagattatccaatcagagtagaggttctaagcaggttt
agaaccgccaaacaacaaaagcaaatcgtagaagatgcaaaaaaaggtttggtagacgtt
ttgataggtacgcatagaattgtatcaaaggatatagatttaagtaagctaggtctagtg
gtagttgatgaagagcaaaggttcggcgtaaagcataaagaagctttaaaaaaattgaaa
gtcgatgttgatgtacttactttatctgcaacaccaatacctagaacacttcatatgtca
ctgagtggcattagagatatgagtattattgaagagccacctcaggaaagatatccagta
cttacatatgtaacagaggctaaggatagtataatacaagatgaaatattaagagaactt
gatagacaaggtcaggtattttttgtatataacagggtggaaggcatagagcaaatggca
tctagaatcaaaaagctggtgccagatgcaagagttggtgtagcacacggtaggatgact
tctagtcagctggaaaatacagtcttgtctttcttggctaaagaatttgatgttttagta
tgtactacaataatagaaacaggaatggatatagcaaatgctaacaccataataatctat
gatgctgataagatgggtctttcacaactttatcagttaagaggtagagtgggaagaagt
acaaagcaaggctatgcttacttgatgtatgaaagaaataaagtcctaagtgaagtagca
gagaagagattaaaagctataaaagaatttactgaatttggttcaggatttaaagttgct
atgagggaccttgaaattagaggtgctggagatgttctaggatctcagcaacatggtcat
atggctgtaataggatatgaactatatgttaaaatgttaaatgaagcaatttctaagatt
aaaggagaagttttaatagaagatacagatgtagaattagaccttagtgtaaatgcattt
ataccaagctcttatattgaagatgaaatattgaaacttgaaatgtacaaaaaaattgct
acaatagatagtaaagaagatatgtatgaaatacaagaagaattagaagatagattctct
aatataccaaaggaaactcaaacattattaaatatagcctatattaaatctctatgtaaa
aggctaaaaataaataaggtaaagcaaaatggaaaagagattaatttagaaccacttaca
aaatatataagtagtgagagcaatggttatgatatagtaatggaacttgaagttatgctt
gagggttttataaaaaacaaagaaaataccaaaaattag
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