Primulina eburnea: 140803334
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Entry
140803334 CDS
T11060
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pebu Primulina eburnea
Pathway
pebu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140803334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pebu03400
]
140803334
DNA repair and recombination proteins [BR:
pebu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140803334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
Motif
Other DBs
NCBI-GeneID:
140803334
NCBI-ProteinID:
XP_073015272
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Position
10:34127741..34146951
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AA seq
941 aa
AA seq
DB search
MDQDLEEQNKLPELKLDAKQTQGFLSFFKRLPRDPRAIRFFDRRDYYTTHGENAIFIAKT
YYHTTTALRQLGSGSDAISSVSVSKNMFETMTRDLLLERTDHTLELYEGTGANWRLVKSG
TPGNLGSFEDILFANYDMQDSPVIVAIALNIRENIRNVGLSYIDLTRRILGLAEFPDDSH
FTNLESAIVALGCKECLLSEEINKSSEYKPLMDAFSRCGAMITERKKTEFKVRDLVQDLC
RLAKGSNDSVRDLLSEFEISLGALACIVSYVDLLADESNYGNYTVQRYDLDCYMRLDSAA
MRALNVFESKTDANKNFSLFGLLNRTCTAGMGKRLLHLWLKQPLLDVNEINSRLDLVQAF
VEDGAIRQDLRQHLKRISDIERLICCLEKKRASLVHVVKLYQSSIRLPFIKSALEQYSGQ
FCSLIRERYLDTLEKWTGDAHLNRFISLVEVAIDLDQLENGEYMISADYDSQLSVLKSEQ
ESLGQQIHELHRNAANDLDLALDKALKLEKSTQYGHVFRITKKEEPKVRKKLNTHFIILE
TRKDGVKFTNTKLKKLSDQYQKVVEEYKNCQKELVANVVQTVATFSEVFEGIAGPISELD
VLLGFADLAANCPTPYTRPSINPPDMGDIILEGSRHPCVEAQDWVNFIPNDCKLIRENSW
FQIITGPNMGGKSTFIRQVGVNVMMAQVGSFVPCESASISIRDCIFARVGAGDCQMRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIIEVIKAPTLFATH
FHELTSLAHDNSNDKLSSRKHIGVANYHVSAHIDQSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPECVVALARAKASELEDFSPIEVLHHDAKEILPKRKRKWDADDVSRGAERARQFL
KDFSELPLDKMDLKQVLEQVNNLRDGLEKDSVNNCWLQQLF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggatttggaagagcagaataagcttcccgagctcaaacttgatgccaaacaa
actcaagggtttctttcatttttcaaaagactacctagggaccctagagctattcggttc
ttcgatcgtcgggattattatacaacccatggtgagaatgctattttcatagcaaagacc
tattaccacactacaactgctttgcgccagctaggaagtggatctgatgccatttctagt
gttagtgtgagtaagaacatgtttgaaacaatgacccgagaccttcttttggagaggacg
gatcacactcttgaattgtacgagggcacaggagcaaattggcgactagtgaaaagtgga
acccctggaaatttggggagttttgaagacattctgtttgctaattatgacatgcaagat
tcccctgtaattgtggctattgcactgaatattcgggaaaatatacgtaatgttggtttg
agctatattgatctaactagaaggatactcggtctggctgaatttcctgatgatagtcac
ttcacaaacctggagtcagctattgttgctctaggatgcaaagaatgccttttgtctgaa
gagattaataaatctagtgaatataaaccgttgatggatgcattttccaggtgcggtgca
atgataactgaaagaaagaaaactgaatttaaagtaagagatttggtacaggatctttgc
aggcttgcgaaagggtctaatgattcagtaagagatctgctttctgaattcgaaatctca
ctgggtgcccttgcatgtattgtgtcttatgtggatttacttgcagacgagagcaattat
ggtaactatacggtccaaagatacgatctagattgttacatgagattagattctgctgct
atgagggcactaaacgtctttgagagcaaaacagatgctaacaaaaactttagcttattc
ggccttctgaatagaacctgtactgctggaatgggcaagcgtttacttcacttgtggctg
aaacaacctttgttagatgtaaatgagataaactctaggctggatttggtgcaagctttt
gttgaggatggtgccattcgccaagatttaaggcagcatttgaaaagaatttcagatata
gagaggcttatctgctgtcttgagaagaaaagagcaagtttggtgcatgtggttaagctt
taccagtcgagcatcagactgccattcatcaaaagtgcattagagcagtacagtggccag
ttttgttcactgatcagagaaaggtatttggatactctagaaaaatggacaggagatgct
catttgaataggttcataagtcttgtggaagttgcaattgaccttgatcaactagagaat
ggagaatacatgatttcagctgactatgattcacaattatctgttctgaaaagtgagcaa
gagtctctgggacagcagatacatgaattgcacagaaatgcagctaacgatcttgatctg
gccctcgataaagctctgaaactagaaaaaagcacacaatatggacatgtctttagaatt
acgaaaaaggaagaaccgaaagtaaggaagaagctaaatacccattttattattcttgaa
actcgaaaagatggggtaaagtttaccaataccaagcttaaaaaactcagtgaccaatac
caaaaggtggttgaggagtataagaactgccagaaagaattggttgcaaacgtagttcaa
actgtcgctaccttttctgaggtttttgaaggaatagctgggcctatctctgaattagat
gttttacttggttttgctgatttggctgctaattgtccgactccctacacacgacctagt
atcaatccaccagatatgggagacattattttagaaggaagtcggcatccttgtgttgaa
gcacaagactgggtgaactttatcccaaatgattgcaagctaatcagggaaaatagctgg
ttccagattatcacagggcctaatatgggtggaaaatcaactttcatacgacaggttggc
gtgaatgttatgatggcacaagttggttcctttgtcccatgtgaaagcgctagcatttct
attcgtgattgtatttttgctcgagtgggtgctggtgactgccagatgcgtggagtttcg
actttcatgcaagaaatgctagagactgcatcaatcttgaaaggagctacagacaagtct
ttaataataattgatgagttaggtcgtggcacatcaacatatgatggatttggtttggct
tgggctatttgtgagcacataattgaagttataaaagcacctaccctgtttgcaactcac
tttcatgagttgacttcattagctcatgataattcaaatgataagctatcttcaagaaag
catataggagtagctaattaccatgtgagtgcacacattgaccaatcaagtcgcaagctt
accatgctttacaaggttgaaccaggcgcctgtgatcaaagctttggaatacatgtagca
gaatttgccaactttccagaatgtgttgttgctcttgcccgtgcaaaggcttccgagttg
gaagatttttcgcccatcgaagttttgcaccatgatgcaaaagagattttaccaaaacgg
aagcgaaaatgggatgctgatgatgtgagtaggggtgctgaacgagctcgccagttctta
aaggacttctctgagctgccgctggacaaaatggacttgaagcaagtgttggaacaagtt
aacaacttgagagatggattggagaaggattcagttaacaattgctggctccaacagtta
ttctag
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