Primulina eburnea: 140803335
Help
Entry
140803335 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140803335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140803335
03012 Translation factors [BR:
pebu03012
]
140803335
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140803335
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140803335
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140803335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
140803335
NCBI-ProteinID:
XP_073015274
LinkDB
All DBs
Position
10:34195416..34206099
Genome browser
AA seq
1120 aa
AA seq
DB search
MFFLLLPLLSSPSSSFSFPYTYQRSLGYGRFAYDEYPSEEDSDREVSSSSKQQLGDSTLD
NVEEWRWKLTMLMRNKSEQEVVSRDKKDRRDFEQLSALAIRMGLHSGRYEKVVVFSKFPL
PNYRPDLDEKRPQREVMLPIGLQRQVESHLRSHLSRKAVTKHDTFLTSSAAHNLALDGPY
EPEESSTQNVISETIVRRRSLQMHNKQQDWQESPEGQKMQEFRRSLPSYKERDLLLNVVA
QNQVVVVSGETGCGKTTQLPQYILESEIDAARGAACNIICTQPRRISAIAVAERVAAERG
EKIGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNED
FLLIVLKDLLPRRPELRLILMSATLNADLFSSYFGGAPMIHIPGFTYPVRSHFLENILEM
TGYRLTPYNQIDNYGQEKMWKMQKQALRKRKTQIASAVEEALSAADYKEHNYRIRESLSC
WNPDSVGFNLIEHVLCHICRNERPGAVLVFMTGWDDINSLKDQLQAHPLFGDPSRVLLLA
CHGSMASAEQKLIFERPKDGVRKIVLATNMAETSITINDVVYVIDCGKAKETSYDAINNT
PCLLPTWISKASARQRKGRAGRVQPGECFHLYPRCVYDVFADYQVPELLRTPLQSLCLQI
KSLQLGSISDFLSKALQQPEPLSVQNAIQYLKIIGALDENENLTVLGRNLSMLPVEPKLG
KMLIYGAIFNCLDPIMTIVACLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLCLVRAY
DGWKDAEKERTGYEYCWRNFLSAQTLKAIDSLRKQFFYLLKDIGIIESEESCNTWSGDEH
INRAVICAGLFPAVSFVVNKEKSILLKTMEDGAVLLHSNSVNAQESKIPFPWLVFNEKVK
VNAVFLRDSTGVPDSAVLLFGGKISRGESDGHVKMLNGYLDFFMKPELADTYLRLNRELD
EFVQKKLLNKKLDIQSYSELLSAVGLLVSEDKCEGRFVFGRQVSAPSKKKSKETRDLGSG
GGDNAKSDLQTLLCRAGHQAPTYKTTQLKNNRFRSTVIFNGLDFVGQPCGSKKEAEKDAA
AEAVRWFTGESQSSQETVDYMSALLKKSKKKQQTSATRWR
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgttttttcttttgctgccgctactttcgtccccttcatcttcgttttctttcccgtat
acctaccagcggagtttgggatacgggaggtttgcttacgatgagtacccgtcggaggag
gattctgaccgtgaagtcagttcgtcttctaagcaacaattgggtgattcgactcttgat
aacgttgaagagtggaggtggaagttgaccatgcttatgcgcaacaaaagcgagcaagaa
gttgtgtccagggataaaaaagaccgacgtgattttgagcagctttcggcgttggcaatc
agaatgggattgcacagtggtcggtatgaaaaggtagttgtatttagcaaattcccgttg
ccaaactacagaccagatttggacgagaagcggcctcagagggaggtgatgctaccaatt
gggttgcaaagacaggtagagtctcatcttagatcacacctttctagaaaggctgtgacg
aagcatgatacctttttgacatcaagtgcagcccataacctagcacttgatggaccatat
gagcctgaggagtcatccacccagaatgttatatctgagactattgtcaggcgaaggagc
ttgcaaatgcacaataaacagcaagactggcaagagtctccagaaggccagaagatgcaa
gaatttagacgaagccttccctcgtataaagagcgagacttgttactgaatgtcgtggcc
cagaatcaggtggtagttgtctctggtgaaactggctgtggaaaaactacacaactccct
caatacatcttagagtcagaaatcgatgctgctcggggagctgcatgcaatattatctgc
acccaaccaagaagaatatctgctattgctgtggctgaaagggttgcagccgagcgtggt
gagaagataggagaatctgttggttacaaagtgcggctggagggaatgagggggagagat
acccgtctccttttttgtactaccggaatccttttaaggagattattggttgacagaaat
ttgaaaggtgtaactcatgttattgtcgatgagattcatgagcgcggaatgaatgaagac
ttccttctaattgtcctgaaggatctccttcctcgtcgacctgagctgagactgattttg
atgagtgcaaccctaaatgctgatcttttctcttcttattttggtggtgctcctatgatt
cacattccgggatttacgtatcctgttcggagtcatttcctggaaaatattctagaaatg
actggctacaggttgacaccatataatcaaattgataattatggtcaagaaaagatgtgg
aaaatgcagaagcaggctcttaggaagaggaaaactcagatagcttcagctgttgaggaa
gctcttagtgctgctgattacaaggagcataattataggattcgggagtctctctcttgc
tggaatccagattctgttggctttaatctcattgagcatgtgctttgtcatatttgtcgc
aacgaaagacctggtgctgtgctggtatttatgactggttgggatgacataaattctttg
aaagatcagcttcaagcccatccactttttggagatccaagcagggttctattacttgcg
tgccacggttccatggccagtgcagagcagaaattgatttttgaaagacccaaggatgga
gttcggaagattgttcttgcaactaacatggcggaaacaagtatcaccataaatgatgta
gtttatgtgattgattgtggtaaagctaaagagacatcttatgatgcaataaataacact
ccatgtttgcttcctacttggatctcgaaggcttctgctcgccaaagaaaaggcagagcg
ggtcgtgtacaaccaggcgagtgtttccatctttatcctagatgtgtgtatgatgtcttt
gcggattatcaagtgccagaacttctgagaactcctttacagtctctctgcttgcaaatc
aagagtctacaacttggaagtatttcagacttcctatctaaagccctacaacaacctgaa
cctttatctgtccaaaacgccatccagtatttaaagataattggtgccttggatgaaaat
gaaaaccttacagtactaggacgcaacctgtccatgcttccagttgagccgaagcttgga
aaaatgctcatatatggtgctattttcaattgcttagatccaataatgacaattgttgct
tgcttaagtgtcagagatccattcttgatgccatttgataagaaggatctggctgagtct
gcaaaggcacagttttctgcacgtgactacagtgatcatctatgtctagtgagggcttat
gatggttggaaagatgctgaaaaggagcgaactggatatgagtactgttggagaaatttt
ctctctgcacagactctaaaagccattgattcccttaggaagcagtttttttatcttctt
aaagacatcggtataattgaaagtgaggagagttgcaacacatggagtggtgatgaacat
atcaatcgagcagttatatgtgctggcctgttccctgcagtaagctttgtggtgaacaag
gagaagtcgatattattaaaaacaatggaggatggtgcagttcttttgcattcgaattct
gttaatgcccaagaaagcaaaattccattcccgtggcttgtttttaatgaaaaagtgaaa
gtgaatgcagtgttccttcgtgattcaactggagtacctgattcggcagttctcttattc
ggaggaaaaatttctagaggggaatcagacggccatgtgaaaatgctgaatggatatctg
gactttttcatgaagcctgagttggctgatacgtatctgagattaaatagagagctcgat
gaatttgttcagaaaaagcttttaaacaaaaaattggacatacagagttatagtgaactt
ctatcagcggtgggattattggtctcagaggacaagtgtgaaggaagatttgtgtttggg
cgtcaggtatcagcaccgtccaaaaagaaatcaaaagaaacccgagatttaggaagtggt
ggtggtgataacgcgaaatctgacctacaaaccttgctttgtagggctggacatcaggca
ccaacctacaagactacccaactaaaaaacaacaggttcagatccactgttatattcaat
ggacttgattttgttggccagccttgtggtagcaagaaagaggcagaaaaagacgctgct
gctgaggctgtgagatggtttaccggtgagagccaatcatctcaagagactgtagattat
atgtctgcccttctaaagaaaagcaagaagaaacaacagacttctgctacaaggtggagg
taa
DBGET
integrated database retrieval system
