Primulina eburnea: 140804391
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Entry
140804391 CDS
T11060
Name
(RefSeq) uncharacterized protein isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140804391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pebu03000
]
140804391
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140804391
04121 Ubiquitin system [BR:
pebu04121
]
140804391
Enzymes [BR:
pebu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140804391
Transcription factors [BR:
pebu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
140804391
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140804391
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140804391
Ubiquitin system [BR:
pebu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140804391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
FYVE
Motif
Other DBs
NCBI-GeneID:
140804391
NCBI-ProteinID:
XP_073016492
LinkDB
All DBs
Position
11:complement(4233641..4240628)
Genome browser
AA seq
846 aa
AA seq
DB search
MNMEEEKRCPLCAEEMDWTDQQFKPCQCGYQVCVWCWHHIIDMAEKEETEGRCPACRTIY
DKDKIVAMQTDCGRTVNKNSNRKNKPPKVKPKTTEVKKDLTNVRVIQRKMVYVIGLPLSL
ADEDLLQRKEYFGQYGKVDKVSLSRTAGGAIQQFVNETCSVYITYSREEEAIRCIQSVHG
FVLEGRFLRASFGTAKYCHAWLKNMPCSNPACLYLHSIGADEDSFGKDEVAAVHTRSRVQ
QIVGAIDSVLTRSGDVLPPPVDDIYSSSSAFTDKFASQNTVGAIPGSVNGKGEIIFSLPS
TEKQGGIAAPLKMTTFVDIVGRSNCPDLEKDGNVHEDRVLKLCSELSSVTTSGDIHGGQS
YSFPNLFRVSSSNHIENGISKNIPDRQAREDSLLFEDQGSKDLYGPSQKSCFFHPSYAAN
VSEDSCGPALLQNKTNSLVDFSVDQNNEHNREDEASLPVRCVNSVLSDAWQEMKFQNSSK
SDRIYRSSSSFSNDEIVEHLRRLDDGNLPNDDENSGLEAVESSIISNIMSMDFDPWERSS
TKTNDASEFLDETRGLNGSSWNTLNSDQSAYSHFRKDGFGSQVVGSVLRDFGDNKEQYLR
KPQYPALLTGTRAQSLAPPGFAATSRDPPPGFSACERTGGMSRIPSGSPLVNTNSLSSTL
LQLPSTEFSSSPDNVNFINPAMLSCGVVKPMNVQKIPGFEMMPISTPNRSAYEDDKKLWH
MMQQQSLSAHTDSKLNQLFALQNPSLLHEFGNTNHMGNELSLDHIYGLSSRLVNQHQNYD
TSFTQLSQQKYANGHISNTNGYHMRSFDDFQRKGGMPMTELGRNERLGVNKYFPGYGDLM
FSSSDV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggaagaggagaagaggtgtcccctgtgcgcggaggaaatggattggacagat
caacaattcaagccttgccaatgtggttaccaggtctgtgtttggtgttggcatcatata
atagacatggcagagaaagaggaaacagagggaagatgtcctgcttgtcgaacaatctat
gataaagataaaattgttgcaatgcagacagattgtggaaggacggtgaataaaaattct
aatcgcaaaaacaagccaccaaaggtcaagccaaagactactgaagtaaagaaggatctt
actaatgtcagagtcattcaacgcaaaatggtgtatgtgattgggctacctcttagtctt
gccgatgaagatttattgcagcggaaagaatattttggtcaatatgggaaagttgacaag
gtctctctctcaagaacagctggtggtgcaattcagcaatttgtcaatgagacttgcagt
gtatacataacttactccagagaggaggaggcaattcgatgtattcaatcagtgcatggt
tttgtgctagaaggtagatttttaagagcatcgtttggtactgcaaaatattgccatgct
tggctgaaaaacatgccttgcagcaatcccgcttgtttatatttgcatagtattggagct
gatgaagatagttttggaaaagatgaggttgctgcagttcatacgaggagtagggtgcaa
caaattgttggtgctattgatagtgtgttaacacggtcgggggatgtgttgccaccacca
gtggatgatatctacagtagtagcagtgcttttactgacaaatttgcatcccaaaatacc
gtgggtgcaattcctggctcggtaaatggcaaaggagaaattattttctcacttccttcc
acagaaaagcagggaggcattgcagcgcccctcaaaatgacaacttttgtcgatatagtt
ggccgttctaattgtcccgatctcgaaaaagatggaaatgtacatgaagacagggtttta
aaattatgctccgaattatcttcagttacaacgagcggagatatacatgggggacagtca
tattcttttcctaacctctttagagtttcatcatctaatcacattgaaaatggaatatct
aaaaatatcccagatagacaagccagggaagattcattattattcgaagatcaaggatct
aaagatctctatggtccaagtcaaaagtcttgtttttttcatccatcttatgctgcaaac
gtgtcggaggattcctgtggtcctgcattgttgcagaataagactaacagtttggtagac
tttagcgtggatcagaataatgagcacaatcgtgaagatgaggcttctttacctgtcaga
tgtgtaaattcagtattaagtgatgcatggcaggagatgaagttccaaaattcttccaaa
tcagatagaatatatagaagctccagttcattttccaatgacgagatagtagagcacctg
cgaagactcgatgatggtaacttgcccaatgatgacgaaaattctggtttagaagctgtg
gagagcagtataatttcaaatatcatgtccatggattttgatccgtgggaaagatcttcg
acaaagactaatgatgcatcagaatttcttgatgaaactcgtggcttgaatggttcttcg
tggaacacccttaatagtgatcaatcagcttattcacattttagaaaggatggctttggg
agtcaagtggttgggtctgtccttcgggattttggggataacaaggagcagtatttgcgc
aagcctcagtatccagctcttcttacaggaactagagctcaaagtttggcaccaccaggg
tttgcagcgacctctagagatccacctcctgggttttctgcttgcgagaggacaggcggc
atgtcccgtatcccatctggaagccctttggtgaatactaattctttgtccagcactttg
cttcaactcccttctaccgaattcagtagcagccccgataatgtcaatttcatcaatcct
gccatgttaagctgtggtgtagttaaaccaatgaacgtccagaaaatcccgggctttgaa
atgatgccaattagtacaccaaatcgcagtgcatatgaagatgataaaaaactttggcat
atgatgcaacagcaatcattatctgcacatacagactcgaaactcaatcaattatttgcc
ctgcaaaatccatctctgctacatgaatttggtaataccaatcatatggggaatgaactt
tctctagaccatatttatggcttgtcttcaaggttagtcaatcaacatcagaattatgac
acttccttcacgcaattgtcacagcagaaatatgcaaacgggcacatttcaaatacaaat
ggataccacatgcgtagttttgacgattttcaacgtaaaggtggcatgccgatgacagaa
cttgggagaaacgagagattaggcgtaaacaagtactttcctgggtatggggatctaatg
tttagttcaagtgatgtataa
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