Primulina eburnea: 140807070
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Entry
140807070 CDS
T11060
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pebu Primulina eburnea
Pathway
pebu03013
Nucleocytoplasmic transport
pebu03015
mRNA surveillance pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140807070
09122 Translation
03013 Nucleocytoplasmic transport
140807070
03015 mRNA surveillance pathway
140807070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140807070
03041 Spliceosome [BR:
pebu03041
]
140807070
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140807070
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140807070
Spliceosome [BR:
pebu03041
]
Complex C
Other components
EJC/TREX
140807070
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140807070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
140807070
NCBI-ProteinID:
XP_073019836
LinkDB
All DBs
Position
12:complement(7364410..7369372)
Genome browser
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYDEEDEKITDSVTAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgacgcttacgaagaggagcttctcgactacgacgaggaa
gacgagaagatcaccgactccgtcaccgccaaagtcaacggcgagtccgccaagaagggt
tatgtaggcattcacagttcaggattcagagatttcctcttgaagccagaacttttaagg
gctattgtggattctggatttgagcatccgtcggaagtgcaacacgaatgcatacctcaa
gctatcttgggaatggatgttatttgccaagcaaaatccggtatggggaaaaccgctgtg
tttgttctctcaacgttgcagcagattgaacctattgcaggtcaagttgctgccctcgtt
ctgtgtcatacaagggaattggcttaccagatctgtcatgaggttgagcggtttagtaca
tatttacctgatatcaaagttgctgttttttatggtggtgtcaacattaaaatccacaag
gatctcttgaagaatgaatgtcctcacattgttgtgggaacaccgggaaggatacttgct
ctcgcaagagacaaggatctttctttgaggaatgtgaggcattttattctggatgaatgt
gataagatgctcgagtcccttgatatgaggagagatgttcaggagatctttaagatgaca
cctcatgataagcaagttatgatgttctcagccacactcagcaaggagattcgtccagtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaaattgact
ctccatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccggaagctg
aatgatctactcgatgcattggacttcaatcaagttgtcatttttgtcaaaagcgtcaat
agagctgccgagcttaacaagttgcttgtggagtgtaattttccatcaatttgcattcac
tcgggcatgtcccaggaagaaagattgactcgttacaagggatttaaagaagggcataag
agaattctcgttgcgacagatctggtgggaagaggaatagacattgaaagagtgaatatt
gtgattaactatgatatgccagattcagctgacacttatctccatcgggtgggtagagct
gggcggttcggaaccaaaggacttgccatcacgtttgtttcttctgcatccgattcagat
gttcttaatcaggttcaggagagatttgaagttgacatcaaagagctaccagagcagatt
gatacatctacatacatgccatcttga
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