Primulina eburnea: 140808457
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Entry
140808457 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140808457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140808457
03012 Translation factors [BR:
pebu03012
]
140808457
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140808457
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140808457
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140808457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_11
nSTAND3
AAA_22
Dicer_dimer
ATPase
AAA_19
PhoH
NACHT
T2SSE
ABC_tran
Beta-prop_WDR35_2nd
AAA_23
Motif
Other DBs
NCBI-GeneID:
140808457
NCBI-ProteinID:
XP_073021704
LinkDB
All DBs
Position
12:complement(25551705..25564494)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSRSVEGSDEYFYGEFERLTQPDASSSDNIDVWKRKLETLLFDKDKQELVSRERKDRRDY
EQIAALASRMDLYSHLYVKAVVVSKVPLPNYRFDLDEKRPQREVILSPGLQKRVHCHLVN
YISEKPTSRNMFSGSSSNATIVTDDLFENPEPFPHSKPNDERNLWRKCLQMRDNQQTWQV
SLPRPISIESTEGRKILEFRRSLPAYKEKDTILSVISQNQIVIISGETGCGKTTQIPQFI
LESEIESMRGAMCNILCCQPRRLSVMSVSERIATERMEKLGETVGFKVRLEGIKGRDTHL
LFCTTGILLRRLLVDKNLKDVTHVIMDEIHERGVNEDFLLVVLKDLLPLRPELRLILMSA
TLDVDIFSSYFSGATVVHIPGFTYPVRHHFLESILETLGYQLTPHNQIDDFGVDKVWKMS
TQSTRKRKSRFFSAVEDAVSTTEFKDYTSKTRESLSCWNPDSLGFNLIEYLLCNICENET
PGAILVFLTGWDDISALKDKLQTHPILGDTSQVLLLACHGSMPCSEQKLIFDKPEDGVRK
IVLATNIAETSITIDDVVFVIDCGKSKESSYDALNNTPCLLPSWISKGSAKQRRGRAGRV
QPGICYHLYPKCVYDGFADYQLPEILRTPLQSLCLQIKSLKLGSIFGFLSKALQSPEYLA
VQNAIVYLKTIGALDENEKLTVLGGYLAMLPMEPKLGKMLLLGAIFNCLDPILSVVAGLS
VRDPFLAPLDKKDLAEAAKAQFSHDFSDHLALVRAYEGWKVADRDLAGYEYCWKNFLSAQ
SMAAIDSLRKEFYNLLKDTGLVDSNPTTWNTWSYDEHLLRAIICYGLFPGICSVVHNEKS
FSLKTMEDGHVLTYSNSANSRHTRIPYPWLVFNEKIKFNSVFLRDSTAVSDSMLLLFGGR
ILRGDMDGHLKMLDGYLEFFVDSATAELYQSLRKELDELINTKLLNPTTAMHFQHELVSA
IRLLISEDQCGGRFVFNRQVIQHSNPFMAAAIARKPASIHKSESGPGGDNAKGQLQMLLT
RAGSVTPVYITKQLKSHQFQATVQFNGMQIMGQPCDNKKQAEKDAAAEALQWLGGNGDGH
DYIENVSMMLKKSKKEHR
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgatctgttgaggggtctgatgaatacttttatggtgaatttgagcgtttgacg
cagcctgatgcttcttcctcggataatattgatgtatggaagagaaagttagagactctt
ttattcgataaggataagcaggagttagtatcaagagagagaaaagatagacgtgattat
gagcaaatagcagcattagcaagcagaatggatttatatagccacctttatgtgaaagcc
gttgttgtcagtaaagttcctttgcccaactataggtttgatctcgatgagaagcggccc
cagagagaggtgatcttgtcgccgggattgcaaaagcgtgtgcattgccatcttgtgaat
tacatttctgaaaagcctacgagcaggaatatgttttctggatcaagcagtaatgctact
attgttactgatgatctttttgagaatccagagccatttccacatagtaagcccaatgat
gagagaaatttgtggagaaaatgtttgcaaatgcgcgataatcaacaaacttggcaggtc
tcactgcctcggccaatttcgattgaatctactgaaggcagaaaaattttggaatttcgt
cgtagtctcccagcttataaagagaaagacaccattttaagtgtcatttcccaaaaccag
attgtcattatctctggtgaaactggctgtggaaagacgacgcagattccacagttcatt
ctcgagtctgaaattgaatctatgcgtggggccatgtgcaatattttatgctgtcagcct
aggagattatctgtcatgtcagtctctgagaggatagccaccgagaggatggagaaattg
ggagaaacagttggatttaaagtgcggctggagggtatcaaaggaagggatacccacctc
cttttctgcacaactggcattctgttgcgtagattattggtcgataaaaatttgaaggat
gtaacacatgttatcatggatgaaattcatgagcgtggcgtaaatgaagattttctgctg
gttgttttgaaagatttgcttcctcttcgaccagaattaaggcttatcttaatgagtgcg
accttagatgtagatatcttctcatcgtacttcagtggggctacagtggtacacatcccg
ggttttacttatcctgtacgacatcatttcttagaaagcattttggagactttgggatac
caattgacccctcataatcagatagatgattttggtgttgacaaggtgtggaagatgagc
acacaatcgacaagaaagagaaagagccgatttttttctgctgttgaggatgcagttagc
actactgagttcaaggattatacttctaagacacgagagtctttatcttgctggaatcct
gattcacttggtttcaacctcatagaataccttctgtgcaatatatgtgagaatgaaaca
ccgggtgctattttagtttttttgactgggtgggatgacataagtgctctaaaggataag
cttcaaactcatcctatactgggagatacaagccaagttttactgttagcatgccacggt
tctatgccatgttcagagcagaaattgatttttgacaaacctgaagatggagtaaggaag
atcgttttagctaccaatattgctgaaacaagcattacaattgacgatgtggtttttgtt
atcgattgtggaaaatcaaaagagtcatcgtacgatgcactaaataacaccccttgtctt
cttccttcctggatttcgaagggttcagctaaacaacgaaggggaagagctggacgtgtt
cagccggggatatgttaccatctttatccaaaatgtgtgtatgatggatttgcagattat
cagttgccagaaattctaaggactcctttacagtctctttgtttacaaatcaagagtctg
aaacttggcagtatctttgggtttttatctaaggctctgcagtctccagagtatcttgcg
gttcaaaatgctattgtttatctaaagaccattggggcgttggatgagaatgaaaagttg
actgttttgggaggctacttggcaatgcttccaatggagccaaaacttgggaaaatgctt
ttacttggtgcaatatttaattgcctggacccaatattaagtgttgttgctggtctaagt
gttcgcgatcctttcctagccccactggacaagaaggatctagcagaagcagcaaaagct
caattttcacatgatttcagtgaccatcttgctcttgtccgggcatacgaaggctggaaa
gttgctgatagggatctcgctggttacgaatattgctggaagaattttctttctgcacaa
tcaatggcagctattgattctcttcgtaaggaattttacaatttactaaaggatactggt
cttgtggatagcaatccaaccacatggaatacctggagctatgatgagcatcttctacgc
gcaattatttgttatggcttgtttcctggaatatgctctgttgtgcacaatgaaaaatcc
ttctccctaaaaacaatggaagatggtcatgtgctgacttactctaactcagccaattca
cgtcacacgagaattccatatccatggcttgttttcaatgaaaaaattaaattcaactcg
gtctttctgcgggattccacagcggtgtctgattcaatgctgctgttatttggtggaaga
atcttacgaggggatatggatggccacttgaaaatgttggatggatatttggaattcttc
gtagattctgctacagctgaactatatcagagcttgagaaaagaacttgacgaactgatt
aacaccaaactccttaatcccacgacggccatgcattttcaacacgaacttgtgtctgcg
atacgtttgctgatctcagaagaccagtgcggtggaagatttgtgttcaaccgtcaggta
atacagcattccaacccattcatggctgcggcaatagcacgaaaacctgcctcgatacac
aagtcagaaagtggccctgggggtgataatgctaagggccagctacagatgcttcttact
cgagcaggctctgttacaccggtctacattactaagcagctgaagagccaccagtttcaa
gcaactgtacaattcaacgggatgcagattatggggcagccttgcgacaacaagaagcaa
gctgaaaaggacgcggcagcagaagctctgcaatggcttggaggaaatggagatggtcat
gattatattgaaaacgtgtcaatgatgctcaaaaagagcaagaaagagcacagataa
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