Primulina eburnea: 140808614
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Entry
140808614 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140808614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140808614
03041 Spliceosome [BR:
pebu03041
]
140808614
03009 Ribosome biogenesis [BR:
pebu03009
]
140808614
03016 Transfer RNA biogenesis [BR:
pebu03016
]
140808614
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140808614
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140808614
Spliceosome [BR:
pebu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140808614
Complex C
U4/U6.U5 tri-SnRNP related factors
140808614
Ribosome biogenesis [BR:
pebu03009
]
Eukaryotic type
Pre-60S particles
Helicases
140808614
Transfer RNA biogenesis [BR:
pebu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140808614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
140808614
NCBI-ProteinID:
XP_073021830
LinkDB
All DBs
Position
13:6186667..6199242
Genome browser
AA seq
997 aa
AA seq
DB search
MGSVKRKSLEAAASEDYEAPTKKQQQDNGLMKTIDEPVACQHDVSYPEGYLPRQALNSGS
IDIENSKPAKEFPFTLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLQHKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIR
EVAWTIFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHQQPC
HIVYTDYRPTPLQHYVFPSGSDGLYLVVDEKGKFREDSFQKALNALVPINEERRKDNGNR
HKGLVGGKAGEDSDIFKMVKMIIMRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVN
IEIIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV
DENLEPSTAKLMLKGSADPLNSAFHLNYNMLLNQIRSEDGDPETLLRNSFYQFQADRAIP
DLEKQAKVLEKERESMIIEGEDSLEDYYSLLEQYKTLKKDVRDIVLLPKHCLPFLQPGRL
VCIQCTKNDENSSSFSVKDDVTWGVIINFVRIKEVSEEDANKKPEDSSYMVDVLTRCRMQ
KDELAKKTIRIIPIKEPGEPAVISIPLSQIDCLSSIRIVIPKDLLPVKARENTLKKVSEV
LNRFVKEGTPLLDPEDDMKVQSSSYRKAARRIEMLENLFEKHEIAKSPLLEQKLKVLHTK
KELTAKIKSIKRMMRSSSVLAFKGELKARKRVLRRMGYITSDDVVELKGKVACEISSADE
LTLTELMFNGVLKDITVEEMISLLSCFVWREKLQESQKPRDELEMLFMQLQDTARKVAKV
QLECKVQIDVDSFVSSFRPDVMEAVYAWAKGSKFYEIMEMSQVFEGSLIRAIRRLEEVLQ
QLIQAAKSIGETELEVKFEEAVTKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagagaaagtcgttggaagcggcggcgagcgaggattacgaggctccg
acgaaaaagcagcagcaagataatggtttgatgaagacaattgatgagccagtggcatgc
cagcatgatgtctcttatccagaggggtatttgcctcggcaagctttgaattcaggttcg
atagacatagaaaactcgaagcctgccaaagagttcccgtttaccctcgacccttttcag
ttggaagcaatcaaatgtttagacaatggcgaatccgtcatggtgtctgcacatacatct
gcgggaaagactgttgtggctttgtacgcgattgcgatgtcattacagcacaagcaacgt
gtgatatatacgtccccaattaaggctctcagcaatcagaagtacagagagttcaaagaa
gagttttcggatgtggggttgatgacaggtgatgtcactattgatcccaatgcttcctgc
ttggtgatgactacagagatctggcgaagcatgcagtacaaaggatctgaggttataagg
gaggtagcatggacaattttcgatgaggtgcattacatgagagacagggagagaggtgta
gtgtgggaagagagcatcgttatggccccaaagaaatcccggtttgtgttcctctcagct
acagttcccaatgcgaaggaatttgctgattgggttgcgaaggtgcaccaacaaccatgc
catattgtttacacggattataggcctacaccgcttcaacattacgtattcccttctgga
agtgatggtctttatttggtggtcgatgaaaaaggaaagtttcgcgaggacagctttcag
aaagctctaaatgcactagttcctattaatgaagaacgaaggaaggataatgggaatcgg
cataagggtttagttggtggaaaagctggcgaggatagtgacatatttaaaatggtgaaa
atgattatcatgcgccagtatgatcctgtcatatgtttcagtttcagcaaaagagagtgt
gaatttcttgcaatgcagatggcaaaaatggatctgaacaatgatgatgagaaggtgaat
attgaaattatattttggagtgctatggatatgctatctgatgatgataaaaagctgcca
caggtctcgaacatgcttcccttattgaaaagaggaataggtgtgcatcattctggtttg
cttcccatattgaaggaagttattgaaattctattccaggaaggattcatcaagtgtttg
tttgcgacagagaccttcagcatagggctgaacatgcctgccaaaactgttgtcttcacg
aatgtccgcaaatttgatggagataaatttagatggatatctagtggggaatacatacaa
atgagtggtcgtgctggtcgccgtggaattgatgaacgtggcatctgtatcctaatggtt
gacgagaatctagaaccttctacagctaagctgatgttaaaaggaagtgctgatcctttg
aacagtgcattccacttgaactacaatatgttattgaatcaaatccgaagtgaagatggt
gatcctgagactttgctccgtaattctttctatcaatttcaagcggaccgagccattcct
gatcttgaaaaacaagcaaaagtccttgaaaaggagagggagtcgatgataatagaaggg
gaagatagcttggaggattattactctttgctagagcaatataaaaccttgaaaaaggat
gtccgtgacatagtgctcttgccaaaacactgcttacccttcctgcagcctggcaggctt
gtatgcatccaatgtacaaagaatgatgagaattcatcttctttttctgtcaaggatgat
gtgacatggggagtcataattaattttgtgaggattaaagaagtgtctgaagaggatgca
aataagaagcctgaagactcgagctatatggtggatgttctcacaagatgtcgtatgcag
aaggatgaacttgctaaaaaaacaatcaggatcattccaattaaggagcctggcgagcct
gctgttatttcaattcccctttcacagattgattgcttgagtagtatccgaatagtaata
ccaaaagacctactgccagttaaggctcgagaaaatacactgaagaaagtgtctgaagtt
ctcaatagatttgtgaaagaaggcactcctctcctagatcctgaagatgacatgaaggtt
caaagcagctcttataggaaggcagcacgtagaatagaaatgttggagaacctttttgaa
aagcatgaaattgccaaatctccactgcttgagcaaaagctaaaagttctacacacaaag
aaagaacttactgccaaaatcaaatctataaagagaatgatgcggtcttcttcagtatta
gcattcaaaggtgaacttaaagcaaggaaaagagtactgaggagaatgggatatattacg
agtgatgatgttgtggagctgaagggcaaagtagcatgtgaaatcagcagcgcagatgaa
ttgacactgacggaacttatgttcaatggggttctgaaggatattacggtggaggagatg
atatctcttctttcgtgttttgtgtggcgagaaaagctacaggaatcccaaaagcctcga
gatgaacttgagatgcttttcatgcaattacaggatacagcacgtaaagttgccaaggtt
cagctcgagtgcaaggttcaaatcgatgttgatagttttgtgagttctttcagaccagat
gttatggaggcggtttatgcttgggcaaaaggatccaaattctatgaaattatggaaatg
tcgcaggtgtttgagggaagcttgatcagggctatcaggaggttggaggaagtccttcag
cagctgattcaagcagctaaatcaattggagaaacagagcttgaagtaaaatttgaagaa
gctgtcaccaagatcaagagagatattgtctttgcagcatcattgtacttgtag
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