Primulina eburnea: 140809144
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Entry
140809144 CDS
T11060
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140809144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140809144
03036 Chromosome and associated proteins [BR:
pebu03036
]
140809144
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140809144
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
140809144
mRNA degradation factors
5'-3' decay
Decapping complex
140809144
Chromosome and associated proteins [BR:
pebu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
140809144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140809144
NCBI-ProteinID:
XP_073022739
LinkDB
All DBs
Position
13:32120756..32127130
Genome browser
AA seq
495 aa
AA seq
DB search
MNSSARYPPPGMGGRRGGGIHSNAGMNPGFQSRNPAQQYVQRSPAPNNNNNQSNQFFQNP
QPQQWLPRTQLTPADATIDEVEKTVQSEAVDSSAQDWKASLKLPPQDTRFKTEDVTATKG
NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV
HLLVGTPGRILDLARKGICILKDCAMLAMDEADKLLSPEFQPSIEQLIGFLPANRQILLF
SATFPVTVKDFKDKYLKRPYIINLMDELTLKGITQYFAFVEERQKVHCLNTLFSKLQINQ
SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR
GIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE
IKQIPPQIDQAIYCQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgagtgcgagatatccgccgccaggtatgggcggccgcagagggggcggaata
cattcaaatgcggggatgaaccctggttttcagtcgagaaaccctgctcagcagtacgta
cagcgtagtccagctccgaataataataataatcagagcaatcagttttttcaaaaccct
cagccacagcaatggctgccaagaactcagctaacgccagctgatgcaactatcgacgag
gttgagaaaactgtgcaatctgaagccgtggattcgagtgctcaagattggaaagcaagc
ttaaagttaccacctcaggacacccgtttcaaaactgaggatgttactgccacgaaagga
aatgaatttgaagactactttttgaagcgcgaacttcttatgggaatatatgagaagggt
tttgagagaccatccccaatccaagaggagagcataccgattgctctcactggcagtgat
atcttagctagggccaaaaatggaactggaaaaactgctgccttttgcattcctgccttg
gaaaaaattgatcaagataaaaatgctattcaagttgttattctagtaccgacccgagaa
ttggctcttcagacatcccaagtttgcaaagaacttgggaagcatttaaaaattcaagtc
atggtaactactggtggaacaagcttaaaagatgacataatgcggctttatcaaccagtt
catctacttgttgggactcctggaagaatcctcgatcttgcaagaaagggtatttgcatt
ttgaaagattgtgctatgctagcaatggatgaggctgataagcttttgtcacctgagttt
caaccttctattgagcagctgattggctttttgcctgcaaatcgtcagattctcttgttt
tctgctacatttcctgttacagtgaaagatttcaaggacaagtacctgaaaaggccttac
attatcaaccttatggatgagcttactctcaagggtataactcagtattttgcttttgtg
gaagaaagacagaaagttcactgcctcaacactctattttcgaagcttcaaataaaccaa
tctattattttttgcaattctgtgaatcgagtagaacttcttgccaagaaaattacagag
cttggctattcttgcttctatattcatgctaagatgcttcaagatcatcggaatagagta
tttcatgacttccgcaatggtgcctgcaggaatcttgtttgcactgacttatttacaaga
gggatagacattcaagccgtcaatgtcgttattaattttgattttcccaaaaactcagaa
acatatttacacagggttggtcgatcaggaaggtttggacaccttgggttagccgtgaat
ttgatcacctatgaggatcgcttcaatttatataggattgaacaagaactaggaacagag
attaagcagatccctccacaaatagatcaagctatctactgccaatga
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