Primulina eburnea: 140811526
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Entry
140811526 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140811526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140811526
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140811526
mRNA degradation factors
5'-3' decay
Decapping complex
140811526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
DUF5536
GerPC
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
DUF2497
DUF445
Motif
Other DBs
NCBI-GeneID:
140811526
NCBI-ProteinID:
XP_073025560
LinkDB
All DBs
Position
14:31221301..31229526
Genome browser
AA seq
1435 aa
AA seq
DB search
MATPGNPNPPGGAPRFDMPKFFRPSTSPAATPASSPNPQNITNSDSAFTNPNLISTPFPL
PSTSFPPPTATGGGQYSYLPQTSPFHPQPQFHHIPIYSPPPNSREFANVHPQRSMSYPTP
TLQPQVPVPSSPHHLNFQAPAGSQNPNNHGARLMALLSAPPSTLDIPNESTMPVPQYLPS
SSGQDFSMPQFVNNLPSGPGLLVSNQGHVMRMPSSKLPKGRHLSGDHLVYDIDIRLPGEV
QPQLEVTPITKYGSDPGLAVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRV
TDMAFFAEDVHLLASASVDGRVYVWKITEGPDEEDKQQITGRIVTAIQITGEGESVHPRV
CWHCHKQEVLAFGIGKHILKIDTAKIGKGEKFSADEPLKCTVDKLVDGIQLVGSHDGEVT
DLSMCQWMTTRLVSASVDGKIKIWEDRNPLPIAVLQPYDGQPVNSVTFLAAPHRPDHIIL
VTGGPLNREVRIWVSASEEGWLLPIDAESWHCVQSLELKSSEVRLEEAFFNQVIALSQAG
LLLLANAKRNAIYVVHLEYGPNPAATHMDYIAEFTVTMPILSFTGTSEYLPNGEHVVQVY
CVQTQAIQQYALDLSQCLPPAIGNVVLEQSDSNVSRKASIIEGLTNLESSGIKATEVSIT
GSAPSSSIHESGLENIPTARYPVDTVSAESPSLQEFAPSGVESKQTPSPVIASDGNHSSV
ASPSLSLSPKQSGTLSGFRNSSSNFEHGVLSSDRGVDLKIVEYTVDRQVDAIHSNLSDVA
SLDSDSRNYDSNHSQDDISLALNHPIKFRHPTHLVTPSEILMANSSSEVIHTSEAQTEVE
LKIQDVVMNNDTNNSVVEVKVVGDKKFNPNIDMDLEKNFGTFLSEKRENIFCSQASDLGI
EMARECHAVSPEAHIVEKDRQFDVTGGTETVAQPLAVEEAIHDSAKDGSSKVMDSSIAVL
APQPALNAKGKKQKGKSAQGSGPSSPSPSAFNSADSSNEPGISYSPSVESQICSMQEILH
QLVALQKDMQKQMTTMVAVPVTKEGKRVEASLGRNMEKAVKANADALWARLQEENAKQEK
ASRERAQQVTNMISSFLNKDLPSLIEKTVKREVSSLGQSVARALIPTIEKAISTSIGESF
QKGVGDKAVNQLEKSVNSKLEAVVARQIQSQFQSSGKLALQETLKSSLEVSVIPAFEMSC
REMFEQVDSAFQKGMVEHTAAAQQQFEASHSSLALVLRDAITSASSMSQTLSNELLDGQR
KLVDLAVAGVNSKAANPLINQLSNGSLAGLHEKHEIDPTKELSRLVAERKYEEAFVAALH
RSDVTVVSWLCSHVDLPTLLVMNPLPLSQGVLLSLVQQLACDIGKETPRKLNWMREVLTA
INPTDPAIMVHVRPIFEQVYQIMNHHRSIPTTTGSELSNVRLIMHVIHSMLMGSK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccctggaaatcccaatccacccggcggagctcctcgtttcgacatgcccaag
tttttcagaccttctacttccccggcggcaacacctgcttccagccccaatccccagaac
attaccaacagtgatagcgccttcactaaccctaatttgatttcaactccctttccgctc
ccctcgacctctttcccgccgcccaccgctaccggcggagggcagtattcgtatcttcct
caaacctcgccgttccatcctcaaccccagttccaccatattcctatttacagtccccca
cccaactctcgggaatttgcgaacgttcacccccaaaggtccatgtcttatcctacgcca
accctccaaccccaagttccagtgcctagttccccccaccaccttaatttccaagcccca
gctggttcccaaaaccctaacaaccacggtgctcgtttgatggcgcttttgagtgctcca
ccttcgacgctggacattccaaatgagtccacaatgccagtgccacaatatctccccagt
tcttcaggccaggatttttccatgccacaatttgtgaacaatttgccatctgggcctgga
ttattagtttcaaatcagggccatgtgatgcggatgccaagcagtaaacttcccaagggg
aggcatttgagcggcgatcatctggtttacgatatagatatcaggttgccaggagaggtc
cagccccagcttgaggttacacccattaccaaatatgggtcggacccaggacttgcagtg
ggcaggcaaattgcagtgaataaaacatatatatgctatggacttaagttgggggctatt
agggtgcttaatatcaacacagcattaagatcgttgcttaagggcctagctcagagggtc
acagacatggctttctttgccgaggatgttcaccttttagctagtgcaagtgtcgatggt
cgtgtttatgtgtggaagattactgaaggtcctgacgaagaagacaagcagcaaattact
gggcgaattgtcactgccattcagattactggagaaggagaatctgttcatccccgagtt
tgttggcattgccataaacaagaagttcttgcctttgggattggtaagcacattttgaag
attgatactgcgaaaataggaaaaggagaaaaattctctgccgacgaacctctaaaatgt
acagttgataagttggttgatggcatccaacttgttggtagtcatgatggggaagtgact
gacctgtctatgtgtcaatggatgaccacccgtttggtatctgcttctgtagatggcaag
attaaaatttgggaagatcgaaatccactaccaatagcagttctccagccttatgatggg
caacctgttaattctgtcacatttttggctgctcctcatcgcccagaccatataatactt
gtgactgggggccctctgaaccgggaagtgaggatatgggtatcagcaagtgaggaaggt
tggttacttcctattgatgctgaatcttggcactgcgtgcaatcgttggaattaaagagt
tcagaggttcgattagaagaggctttcttcaatcaagtgatagccttatcacaagctggt
cttcttttattggcaaatgccaaaaggaatgctatatatgttgtgcacttggaatacggt
cctaatcctgccgcaacacacatggattacatagccgaatttactgtcacaatgccaata
ctgagttttacagggacgagcgaatatctacctaatggggagcatgttgttcaggtatat
tgtgtccagacacaggctattcagcagtatgcgttggacttatcacagtgtctgccacct
gcaataggaaatgtagttcttgagcagtcggactccaatgtttcacgcaaagcttctatt
atagaaggacttaccaatttggagtcttctggcattaaagcaactgaggtatctataact
ggttcagcaccctcatcatccatacatgaaagtggcttggagaatatacctactgcgaga
taccctgttgacactgtttctgccgagtcacccagccttcaggagtttgctccctcaggt
gttgaaagcaaacagacaccttcacctgttattgctagtgatggtaatcattcttcggtt
gcttcaccttctctatctttgagccccaagcagtccggaacactttctggttttagaaat
tcatcgagcaactttgagcatggtgttttgagcagtgatcggggtgtagatcttaaaatt
gttgaatatactgttgacagacaagtggatgccattcatagtaacttgtctgacgttgct
tcattggatagtgattcaagaaactatgacagtaaccattctcaagacgatatctccttg
gcactcaatcatccgataaaattcagacaccccactcatctggttactccttctgagata
ttgatggccaattcatcatcggaggtgatacacacatcagaggcccaaaccgaggtcgaa
ctaaaaattcaagatgtggtaatgaacaatgatacaaacaattctgttgtagaggtaaag
gtagtgggcgataagaaatttaatccaaatattgatatggatctcgagaagaacttcggt
acttttttgtcggaaaagagggaaaatatcttttgctctcaagcatctgaccttggaatt
gagatggcccgagaatgccatgccgtatcaccagaagctcatatagtggagaaagatcgg
cagtttgatgtgactggtggaactgaaacggttgcccaacctttggctgtagaagaagcg
attcatgactccgcgaaggatggttccagcaaagtcatggattcatcaattgctgtgctg
gccccgcaacctgcattaaatgccaaagggaagaagcaaaagggaaagagtgctcaagga
tctggcccatcttcaccctcaccgagtgctttcaattcggcagattcttctaatgaacca
ggcatcagctatagtccttctgtagaatcacaaatttgttccatgcaagagatcctgcat
cagcttgtagctctgcaaaaagacatgcagaagcagatgacaacaatggttgctgtccct
gttaccaaagaaggcaaaagggtcgaggcatcattgggacgtaacatggagaaagctgta
aaagcgaatgctgatgctttatgggctcgcttgcaagaagagaatgcaaaacaggaaaag
gcatctcgagagcgagcacaacaagtaacaaatatgatcagcagtttcttaaacaaagat
ttaccttcattgatagagaaaactgtgaaacgagaagtttcttcacttgggcaatcggtg
gctcgggctctcattcccacaatcgagaaagcaatatccacttctattggggagagtttc
cagaaaggggtgggtgataaagctgttaatcaactggaaaaatcagtcaactccaagctt
gaagctgtagttgctaggcaaatccaatctcaatttcaatcttctggcaagctagctctt
caggaaacattgaaatcgagtttggaagtttctgtgatccctgcatttgagatgtcatgc
agggaaatgtttgagcaggttgattccgcgtttcaaaaaggaatggttgaacatactgct
gcagctcagcagcagtttgaggcttcacattcatcacttgcacttgttttgagggatgcc
ataacttccgcatcatcaatgtctcaaactttgagcaatgagttgcttgatggtcaaaga
aaattggtagatcttgctgttgcaggagtaaattctaaagcagcaaatcctttgattaat
cagctgagtaatggttctttggctggtctacatgagaagcacgagattgatccaacaaaa
gagctttctagattggtagctgagcggaaatatgaggaggcttttgttgctgccttgcat
aggagtgatgttactgttgtatcatggctatgttctcatgttgatttgccaacgcttttg
gttatgaatccactaccattgagccaaggggtactcctctctcttgtacagcaattggcc
tgtgatattggcaaggaaacccctcgaaaactaaattggatgagggaggttctaactgct
ataaatccaaccgacccagcgattatggtgcacgtacgtcccatctttgagcaagtttat
caaataatgaatcaccatcgcagcattccaaccactacgggttccgaactttccaacgtt
cgcttgattatgcatgtcatccattccatgcttatgggctctaaatga
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