Primulina eburnea: 140812114
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Entry
140812114 CDS
T11060
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pebu Primulina eburnea
Pathway
pebu03013
Nucleocytoplasmic transport
pebu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140812114
03015 mRNA surveillance pathway
140812114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140812114
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140812114
5.6.2.5 RNA 5'-3' helicase
140812114
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140812114
mRNA cycle factors
Common to processing body (P body) and stress granule
140812114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
Viral_helicase1
PhoH
SRP54
AAA_16
AAA_22
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
140812114
NCBI-ProteinID:
XP_073026419
LinkDB
All DBs
Position
14:23515494..23534848
Genome browser
AA seq
1271 aa
AA seq
DB search
MDSQTNNLYETASQPDEGNDAYTFLEFHTQGEEDFAYPEFQELSQPIRLSSSLWPATSDS
IAAADTAFSTESSPTNKLRGGISNSNNNNSAASGSGSSGNNGSKEGVVEALAAGMSGLNF
EDTGDDEVFDYGKGDFAEHACKYCGITNPACVARCNVPSCRKWFCNSRGNTSGSHIVNHL
VRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSSNALK
DMNWDLSQWCPLIDDRCFLQWLLKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDL
EKPGVDEEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITVRWDIGLNKK
RIAYFVFPKEDNELRLVPGDELRLRYPGDASHPSWQSVGHVIKLTSQEEVALELRVSQGV
SVDVNHGFSVDFVWKSTSFDRMQGAMKTFALDETSVSGYIYHHLLGHEVDMQIVRNALPR
RFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA
PSNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ
LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDEST
QATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQ
VQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISS
SGTSYLNRTEAANVEKIVTTFLKSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYK
EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL
SKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDHRLFYGGGAGGVSNDTF
GSVASSPGADRRGARSRGPYMSPAPPNGAHKPGVHPAGYSMPRVPLSPYHSGPPSQPYAI
PTRGAVHGPVGTVPQMPQPGSRGFGGGRGSISAPIGSHLPHQQVGQSPIGSIASNYNFPA
MENASSQPNAGGLLSQPGYVSNMTGQGPSQTFSDRFSMGGMSQDFLGDDFKSQGSHVPYA
EFSTQATQGGYGVDYITQGAQGGFPGSFLNQSSHAGYGRFATGNDFMSQEYMAHGSLGLF
TQAAFNEQSQDDSSQNLYGGGNARPLQTQSFLNPLYSQPLAHYNAQQPNMQNSQQQHSSQ
PGQASQNPKIH
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagacgaacaatctttacgagaccgcgtcccagccggatgaggggaacgat
gcgtatacgttcttagaattccacacgcaaggcgaggaagattttgcttaccctgaattt
caggagctctcgcagcctattcgattgtcttcctctctgtggcctgcaacgtccgattct
attgctgctgcggatactgctttctccactgagtcctctccgacaaacaaactccgcggt
ggaattagcaacagcaacaacaataatagcgctgccagcggtagtgggagtagtggtaat
aatggtagtaaggagggagtggtggaggcattggccgcagggatgagcgggctgaacttt
gaagataccggtgatgacgaggtttttgattatgggaagggtgattttgctgaacatgct
tgcaagtactgtgggatcaccaaccctgcatgtgttgcacggtgcaatgtgccatcatgt
aggaaatggttctgtaattcacgagggaatacatctggttctcacattgtaaatcatctg
gtgagagcaaagcacaaggaagtgtgtcttcataaagatagtcctttgggagaaacaatt
cttgagtgttacaactgtggatgccggaatgtcttccttcttggattcatatctgcaaag
acagagagtgtggtggttcttctttgcagagaaccttgccttagttctaatgctttgaag
gacatgaattgggatctcagtcagtggtgcccgcttattgatgacagatgtttcttgcaa
tggctgttgaaagtcccatctgaacaagagcagttgagggcaagacaaattagtgcccaa
cagataaataaaatcgaagagctttggaagacaaatcctgatgctaccttggaagatctt
gagaaacctggtgtggatgaggaacctcaacctgtagtgctcaagtacgaggatgcatac
cagtatcaaaatgtctttgcaccactcattaagcttgaagcggactatgacaagatgatg
aaagagtctcaaagcaaagataacatcacagttcgatgggatattggcctaaataagaag
cgtattgcttactttgtctttccaaaggaagacaatgagttacggctagttcctggtgat
gaattaaggctgcgttatccaggagatgcatctcatccctcatggcagtccgtgggtcat
gtgataaaattaacttcacaagaggaggttgctcttgagcttcgtgttagtcagggtgtt
tctgttgatgtgaaccatggttttagtgtcgactttgtttggaaaagcactagttttgat
cgaatgcaaggggccatgaaaacatttgcgctggatgaaacaagtgtcagtgggtacatt
tatcatcatttactgggccatgaagtagatatgcagatcgttcgaaatgcgttgcctcgc
cgatttggtgcaccgggtcttccagaacttaatgcatctcaggtttttgctgtgaagagt
gttttacaaaaacctataagtctcatacaaggtcctcctggaactggtaaaactgtcacc
tcagctgcaattgtatatcatatggcgaagcaaggccagggacaggttcttgtatgtgct
ccaagtaatgtggctgttgatcagctagctgaaaagataagtgccactggtttgaaggtt
gtcagaatttgtgcaaagtcaagggaagctgttagttcccctgttgagcatttaaccttg
cattatcaggttagacatcttgacacttctgaaaagagtgaacttcacaagttacagcag
ctgaaagatgaacaaggggaattgtccagcagcgatgagaaaaaatataaagctctcaaa
cgagctactgaaagggagatatctcagagtgctgatgttatctgttgtacatgtgttgga
gctggagatcctcgcttggcgaatttcagatttcgccaggtgcttatcgacgagtctacc
caggcaacagagcctgagtgtcttattcctttggttcttggagtgaaacaggttgttctt
gttggagaccattgccaacttggtccagtcattatgtgcaagaaagctgctcgtgctggt
cttgcacagtcgctatttgaacggcttgtgctgcttggggttaaaccaattaggttgcag
gttcagtataggatgcatcctgccctttcagagtttccctctaacagcttttatgaaggc
actcttcaaaatggagtgacaattaatgagaggcaatcaccaggcatagacttcccttgg
cctgtaccaaatcgtcccatgtttttctatgtccagatgggacaagaggagataagttca
agtggaacatcctacctaaataggactgaagctgcaaatgttgagaaaattgtgactacg
tttttgaaaagtggtgtagttcctaatcagattggtgttataaccccatatgaaggccag
cgggcatacattgtgaattatatgtctcgcaatggtgctttacggcagcagctatacaaa
gaaatcgaggtggctagtgtggattcatttcagggaagagaaaaggactacataattttg
tcttgtgtgaggagtaatgaacaccagggcattggtttcctcaatgatccacgccggctt
aatgttgccctcacacgtgctcgttatgggatagttatcctaggaaatccaaaagttttg
agcaaacaacccctctggaatggcttattaacacactacaaagaacatgaatgcttggtt
gagggacctctgaataatttaaagcagagcatggttcaatttcagaagcccaaaaagata
tacaatgatcaccgacttttctatggtggtggagcaggcggcgtctccaatgatactttc
ggatctgttgcatcaagccctggtgctgataggaggggtgctcgctctaggggtccttac
atgtcgcctgcaccacctaatggtgctcataaacctggtgttcaccctgctggttattca
atgccacgagtgcctctctccccataccacagtggccctccttctcagccttatgccatt
cctacccgtggtgctgtacatggacctgttggaactgttcctcaaatgccacaacctgga
agtcgaggatttggtggtgggcgtgggagcatcagtgctcctattggtagccatcttcca
catcagcaggtcgggcaatcccctattggaagtattgcatctaactacaatttcccagct
atggagaatgccagcagccagccaaatgctggtggattattatctcagccaggatatgtt
tccaatatgacaggtcaaggacccagccaaacatttagcgaccgattctcaatgggtggc
atgtctcaggatttcttgggtgatgattttaaaagccagggatctcatgttccatatgct
gaattctctactcaggcaactcagggtggatatggtgttgactatatcacacagggtgct
caaggtggatttcctgggagttttttaaaccagagctctcatgctggatatggtcgtttt
gcaacaggaaatgacttcatgtctcaggaatacatggcccatggttctcttggactattt
acacaggctgcgtttaacgaacaatctcaagatgattcttctcaaaacctctacggaggg
ggtaatgcccgtccgcttcagactcagagtttcctgaatcccctctattcgcaaccatta
gcacactacaatgctcaacagccgaacatgcaaaattcccaacaacagcattcatcccag
ccaggtcaagcctcccaaaatccgaaaatccactaa
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