Primulina eburnea: 140812939
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Entry
140812939 CDS
T11060
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140812939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140812939
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140812939
mRNA degradation factors
5'-3' decay
Decapping complex
140812939
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140812939
NCBI-ProteinID:
XP_073027422
LinkDB
All DBs
Position
14:complement(31341152..31346624)
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AA seq
805 aa
AA seq
DB search
MDEYGDGGSIQESSNLQDLEPFTANPTVFDATQYAFFGNNAVEEVELGGLEDDEGVLGAV
GFNEEGLQLEREEVAKSGDAFGSLSDVDDLSVTFSKLNKTVSWPAGVGGDWGSRESSSAA
EWAQEGDFIWFDRQALDTETGHGTKNWPSQPYSSARFIESNSLLRTSSHPEQQQQHPHQQ
QNKHNHFSSEPILIPKSTFTSYPPPGRLQQNSPNGQSSHTNIMHQPGGLQIPLTSSNILP
FPNPQLPLNTLTHGSQFGGNLPQMPHGRLQNQWMNQNSPFPGDRSGLPNNILPQPLSNQN
GLMPPQIMSHQRSLQTRMHHPFQPAFTQLSGLQPQLFNPHLSVSPPMMNNFEMIGSPDLR
DQRAMSMMRSRQGMRYPPQGYDTSGQKVESGWPRFKAKYMSTDEIENVLRLQLAATHSND
PYVDDYYHQACLARKSVDAKFRHHFCPTNLSDGPTRARSIAEPHHFLQVDALGRVSFSSI
RRPRPLLEVDSSNSSNTVGADSKFTEKPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQF
NQLHDGGVLLRQRKHVLLEGLASSLQLVDPLGKNGHTVDLAPKDDFVFLRLVSLPKGRKL
LLRYLQRLLPGELTRVVCMAIFRHLRFLFGNVPTDPEAMASTANLAIAVSSCVRGMELKS
LAACLASVVCSVEHTPLRPIGSPTGDGATVVLKSVLDRATELLTDPQAAGNCSMPNRSFW
QASFDAFFSLLTKYCFNKYDSVVQSVIQGSPDTPDVGSDVAKAISREMPVELLRASLPHT
NEQQRKLLLEFAQRSMPVLGSSSQI
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatacggagatgggggcagtattcaagagtcctccaatcttcaggatctcgaa
ccatttactgcaaatccaacagtatttgacgctacacagtatgcattctttggtaacaac
gcggtggaagaagttgagctcgggggattggaagatgatgagggagttctcggcgcagtt
ggattcaatgaagaggggctccagctcgagagagaagaggtggctaaatcaggtgatgcg
tttggatcactatctgacgttgatgatctttcagtcacattttcgaagttgaacaaaaca
gtcagttggccggctggagttggtggagactggggatctagagaaagctcatctgctgct
gagtgggcgcaggagggagatttcatttggtttgatcgacaagcccttgatactgaaact
ggccatggtactaaaaactggccctcacaaccatattcttctgcacgcttcatagaatcc
aattccttgctcaggacatcttcacatcccgaacaacagcagcagcatccacatcaacaa
cagaacaaacataatcacttttctagtgagccaattctgattccaaaatcaacattcact
tcgtatccaccacctggcagattacagcaaaattcaccaaatggccagtctagccacact
aatatcatgcatcaacctgggggcctgcaaataccattaacttcctccaatattttaccc
tttcctaatccacagctcccattaaataccttgactcatgggtcacaatttggtggaaat
ttgcctcagatgcctcatggtcgactccaaaatcaatggatgaaccagaatagtccgttt
cctggtgatcgatctggtctcccaaataatattttaccccagccattatcaaatcaaaat
ggtttaatgcctccacagataatgtctcatcaacgttctttgcaaactagaatgcaccat
ccatttcagcctgcctttacccaattatctgggttgcaacctcaactatttaatcctcac
ttatctgtgtcaccaccgatgatgaacaactttgaaatgattgggtcccctgatttgaga
gatcaaagagctatgtcaatgatgagaagtagacagggaatgcgctatcctcctcagggt
tatgacacaagtggccagaaggttgagagtgggtggccaaggttcaaggctaagtatatg
tctacagatgaaattgaaaatgttcttaggttgcagcttgctgctactcatagcaatgat
ccgtatgtggatgattattatcatcaagcttgcctagcaagaaaatctgtggatgcaaaa
tttagacatcatttctgtccaactaatttgagtgatgggcctaccagagctcgttctatt
gccgagccacatcactttctccaggttgatgctcttgggcgagtttccttctcttcaata
cgcagacctcgaccgcttcttgaagttgactcctcaaattcttctaatactgttggggct
gattcaaaattcactgagaagcccttggaacaggaacctatgcttgctgccagggtgact
attgaggatggcatctgccttttacttgatgttgacgatattgacagatttttacagttt
aatcaactgcatgatggtggggtcctgttgaggcagaggaaacatgttctactggaaggt
ttagcatcatcacttcagcttgttgaccctctagggaaaaatggccacactgtagattta
gctcccaaagatgactttgtgttcttaaggttagtctctcttcccaagggtaggaagctc
ttgttgaggtatcttcaacgtcttttgccaggcgaactgactcgagtagtctgcatggcc
atcttccgccatttaagattcttgtttggtaatgttcctactgatcctgaggcaatggca
tcaactgcaaatcttgcaatagctgtatcatcgtgtgttcgtggtatggaacttaaatct
cttgctgcctgtcttgcatcagtggtatgttcggtggaacatactcctcttcgtcccatt
gggagtcctactggagatggagcaacagttgttctgaaatctgtccttgatagggcaact
gagcttctgactgaccctcaagctgctggaaactgcagcatgccgaaccggtctttttgg
caggcctcatttgatgccttctttagtcttcttactaaatactgctttaataaatatgac
tctgttgttcaatctgtcatccagggctcgccagacacacctgatgttgggtctgatgta
gccaaagcaattagcagagaaatgcccgttgaactcttgcgagcaagtcttcctcacaca
aatgagcagcagagaaaactcctgttagaatttgcccagcgatctatgcctgttttgggc
tctagcagtcagatttga
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