Primulina eburnea: 140813705
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Entry
140813705 CDS
T11060
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03020
RNA polymerase
pebu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140813705
09124 Replication and repair
03420 Nucleotide excision repair
140813705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140813705
03400 DNA repair and recombination proteins [BR:
pebu03400
]
140813705
Enzymes [BR:
pebu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140813705
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
140813705
DNA repair and recombination proteins [BR:
pebu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
140813705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
G1_gp67_C
Motif
Other DBs
NCBI-GeneID:
140813705
NCBI-ProteinID:
XP_073028454
LinkDB
All DBs
Position
15:32018866..32027051
Genome browser
AA seq
1819 aa
AA seq
DB search
MDLRFPYSPAEVSKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSKILADEEEPK
FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVHGQDSDEPVKKSRGGCGAQQPKISI
DGMKMVAEYKLQKKKNDDQDQLPEPVERKQLLTAEKVLSILKRITDEDCQLLGLNPKYAR
PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCVVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRYSSWHQESERGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKELIRAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQP
LESLKLKKADFNDMYRYEIDNPNWNPNYMSPESVEDLKTIREIRNVFDAEVQKLEVDRYQ
LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDIHPMEIVEAVDKLQERLKVVV
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
SDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTVIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGDLNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNRFDENEGFKA
ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDR
LRGVTENIMLGQLAPIGTGDCSLYLNEEMLKQAIEIPLPSYIDGGLEFGMTPARSPLTGT
PYHDGMMSPNYLLSPNLRLSPITDSQFSPYVGGMAFSPATSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPS
YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT
SPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSLAYSPTSPKITPSSPYSPSSPSYSPT
SPSYSPTSPSYSPSSPSYSPSSPYSSGASPDFSASSPQYSPSAGYSPSAPGYSPSSTSQY
TPRSNDADDKSVKDEKSRR
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcgcttcccctattctccggcggaggtttccaaagtccgtgtcgtccaattc
ggcattctaagccctgatgaaatcaggcaaatgtccgtggtgcacatagagcacagcgag
acgacggaaagaggaaagccgaagccagggggtctgagcgacccacgtctggggacaatt
gatcggaagatgaagtgtgagacttgtatggcgaacatggctgagtgtccaggtcatttt
ggtcatcttgagcttgcaaaacccatgtttcatattgggttcatgaagactgttctcagc
attcttcgctgtgtttgctttaattgctccaaaattttggctgacgaggaagagccaaag
tttaagcaagcaatgagaattaggaacccaaaaaatagattaaagaagatattagatgca
tgcaagaacaaatccaaatgtgaaggtggtgatgaaattgatgtgcacggtcaagactct
gatgaaccggtgaagaagtctaggggtggatgtggtgctcagcagccaaaaatttctatt
gatggcatgaagatggtggctgagtacaagcttcaaaagaagaaaaatgatgaccaggac
cagcttcctgaacctgttgagaggaaacaacttcttactgcagagaaggttcttagcatt
ctgaagagaataactgatgaagactgtcagttattgggtttgaatccaaaatatgctcgc
cctgattggatgattcttcaagctcttccaattcctcccccacctgttagaccttctgtg
atgatggatacttcttctaggagtgaggatgatttaactcatcaactggcaatgatcatt
cggcacaatgaaaacttgaagagacaggagcgaaatggggcccctgcgcacatcatctct
gagtttgcgcagttgttgcagtttcatatagctacatactttgacaatgaattaccagga
cagccccgggctacccaaagatctggcaggccgattaaatcgatatgcagccgacttaaa
gcaaaagaaggtcgaatacggggtaatttgatgggaaagagggtagatttttcggctcgt
actgtgattacacctgatccaaccatcaatatcgatgaactgggcgtaccttggagtatt
gcattaaatctcacatacccagaaactgttaccccatataacattgagaggttgaaagag
cttgtagagtatggaccacaccctccacctggtaaaactggtgccaagtatataattagg
gatgatggacaaaggctggatctccggtacttaaagaaaagcagtgatcaacatctggaa
cttggctataaggtggagagacacctaaacgatggagattttgtcctgttcaatcggcaa
ccaagtctccataaaatgtctataatggggcatagaatcaaaataatgccttattcaaca
ttccgattgaatttatctgttacctctccctacaatgctgattttgacggggatgaaatg
aacatgcatgtgccccagtcatttgaaaccagagctgaagtgctagaattaatgatggtt
ccaaaatgcgttgtctcacctcaagcaaatcggcctgtcatgggaatagtccaggataca
cttttaggatgtcgtaaaattaccaaaagggatacatttattgagaaggatgttttcatg
aacattctgatgtggtgggaggattttgatggcaaagtacctgctccagcgattttgaaa
cctcggcctctctggactgggaagcaagtgttcaatttaatcataccaaaacaaataaat
ttgctgagatattcatcatggcatcaagaaagtgaaaggggatttataactcctggggat
actcaagtacggatagagaaaggggagttactttctggcactctatgtaagaagacactt
gggacatctactggaagtcttatacatgtaatttgggaagaggtcggtccagatgcagct
cgcaaatttttggggcacacacagtggcttgtcaattattggcttttgcagaatgctttt
agcattggaattggtgacacaattgccgatgcttctacaatggagaagattaatgaaact
atttctaatgcaaagaatgaagtgaaagagctcattagagctgcgcaagaaaaacagtta
gaggctgaacctggtagaacaatgatggagtcatttgaaaacagagtgaatcaggtgtta
aataaggcccgtgatgatgctggtagcagtgcccagaaaagcttgtcagaaagcaacaac
cttaaggcgatggtcacagctggatctaagggaagttttatcaacatatctcagatgact
gcttgtgtggggcaacaaaacgttgaaggcaagcgaatcccttttgggttcatagatcgt
acgctgcctcacttcaccaaagatgattatggcccagagagtcgtgggtttgtggagaac
tcatatcttagagggctgactcctcaagagtttttcttccatgctatgggtggtagggaa
ggtttaatagatactgcagtgaaaacttctgaaactggatacattcaaaggcgattggtg
aaggcgatggaggatataatggtcaagtatgatggaaccgtcaggaattctttaggggat
gtgattcagtttctctatggagaagatggtatggattctgtttggattgaatctcaaccc
ctggagtcattgaagctgaaaaaagcagatttcaatgacatgtacagatatgagattgat
aatccaaactggaatcctaattacatgtctccagaatctgttgaagatcttaaaacaatt
cgtgaaatccgcaatgtatttgacgctgaggttcagaaacttgaagttgatagataccaa
cttgggacggagatagctaccacaggtgataactcttggcctttgcccgttaacattaaa
aggcttgtcttaaacgcacagaaaacttttaaggttgatttccgtagaccttctgatata
cacccaatggagattgtggaagctgttgataagttgcaagaaaggcttaaggttgttgtt
ggtgatgattatttgagtatggaagcccaaaagaatgctactttgtttttcaatatttta
ctacgtagtgcattggcgagtaaaagggttttgaaggaatacagacttacacgtgaagct
ttcgaatgggttattggtgagattgaatctcgctttttgcagtctctggtagcaccaggg
gaaatgatcggttgtgtagccgcacaatctattggtgagcctgcgactcagatgactctt
aatactttccattatgctggtgtgagtgccaagaatgttactttaggtgttccgaggttg
agggagatcattaatgttgctaaaaaaatcaaaacaccctctctctcagtatacttgaag
tctgatgtgagtaaaaccaaggagagggcgaagaatgttcagtgtgcactcgaatacact
actttgcgaagtgttacacaagctactgaggtatggtacgatccagatccaatgagtaca
gtcattgaggaagatgtcgagtttgtgaagtcctattatgagatgccagatgaggagatt
gacccagataagatctctccttggttgcttcgtatagaattaaatcgggaaatgatggtg
gacaagaagcttagcatggctgatatagcagagaaaattaatcttgaatttgatgatgat
ctgacttgtatatttaatgatgacaatgccgagaagctgatccttcggattcgtatcatg
aatgatgaagctccgaaaggtgatctgaatgatgaatctgcagaggatgatgtgttcctc
aaaaagattgaaagtaacatgcttacagaaatggctcttcgaggcattccagatatcaat
aaagtgttcattaagaatagtaagctgaataggtttgatgagaatgaaggattcaaggct
gagaatgagtggatgctggatactgagggtgtcaatcttttggctgtcatgtgtcatgaa
gatgttgatgcaaagagaacgacgagcaatcacttgattgaagttatagaagttctagga
attgaggcagttcgaaaagctttgctagatgagctgcgtgttgtcatatcttttgatgga
tcttacgtgaattatagacatttggctatactgtgtgataccatgacctaccgtggtcat
ttgatggctatcactcgtcatgggatcaaccgcaatgatactggccccatgatgaggtgc
tcattcgaagaaacagtggacattctactggatgctgctgtctttgcagaaacagatcgt
cttaggggtgtcactgaaaatattatgttaggacaacttgccccaattggcactggagat
tgttccttgtatctgaatgaagagatgctgaagcaagctattgagatccctctacctagt
tacattgatggtggactagagtttggcatgacgcctgcccgttcaccactcactggcacg
ccatatcacgatggcatgatgtcaccaaattatttactgagtccaaatctgcgattgtct
cccattaccgattctcagttttctccttacgttggtggaatggcattttctcctgctaca
tcccctggctacagcccatcatcccctggctacagccccacctcccctggctatagcccc
acttcccctggctatagccccacttccccaacctatagtcctagttctcctggttatagc
ccaacaagccctgcatattctcctactagcccctcctacagccccacgtctccgacctac
agccccacgtctcccagctacagccccacatctccgagctacagccccacgtctcccagc
tacagcccaacctctcctgcatacagcccaacctctcctgcttacagccccacgtctcct
tcgtacagcccaacctctccttcgtacagcccgacctcaccttcctacagccccacgtcc
ccatcttacagcccaacttcaccatcgtatagcccaacttctcccgcctacagtcccacc
tcccctggttacagtcccacctcccctagttacagtcccacctctccaagttacagtccc
acatctccgagttacaacccttcagcaagatacagcccgtctcttgcatattcacctaca
agtccaaagatcacaccttcaagtccctacagtccctcttctccgagttatagccctaca
tctccgtcatattccccaacatctccatcttattctccttctagtccaagctacagtcca
agcagcccatatagctctggtgctagccccgactttagcgctagctctccacagtacagc
ccaagtgcaggatattctcctagtgcacctggctactccccatcttcaacaagccaatac
actccccgtagtaacgacgcggatgataaaagtgtaaaggatgagaagagccgtcgttga
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integrated database retrieval system
