Primulina eburnea: 140814068
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Entry
140814068 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pebu Primulina eburnea
Pathway
pebu03013
Nucleocytoplasmic transport
pebu03015
mRNA surveillance pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140814068
09122 Translation
03013 Nucleocytoplasmic transport
140814068
03015 mRNA surveillance pathway
140814068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140814068
03041 Spliceosome [BR:
pebu03041
]
140814068
03009 Ribosome biogenesis [BR:
pebu03009
]
140814068
03012 Translation factors [BR:
pebu03012
]
140814068
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140814068
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140814068
mRNA cycle factors
Stress granule specific factors
140814068
Spliceosome [BR:
pebu03041
]
Complex C
Other components
EJC/TREX
140814068
Ribosome biogenesis [BR:
pebu03009
]
Eukaryotic type
90S particles
Helicases
140814068
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
eIF-4
140814068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
NAT10_TcmA_helicase
Utp25_C
TniB
CMS1
Motif
Other DBs
NCBI-GeneID:
140814068
NCBI-ProteinID:
XP_073029028
LinkDB
All DBs
Position
15:complement(1055832..1059888)
Genome browser
AA seq
408 aa
AA seq
DB search
MAAPAVQRGGGGRRAMGEDDANLVFETSKGVEPILSFDEMGIKDDLLRGIYNYGFEKPSA
IQQRAVLPIISGRDVIAQAQSGTGKTSMIALAVCQIVDTKSSEVQALILSPTRELAAQTE
KVILAIGDYINIQAHACIGGKSVGEDIRRLEHGVQVVSGTPGRVCDMIKRRTLRTRSIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMSDPVRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFT
VSSMHGDMPQKERDAIMQEFRSGQTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcagctccggcggtacagagaggaggcggtgggcggcgagctatgggggaggacgac
gcgaatctggttttcgaaacttccaagggtgtggagccaattttgagcttcgacgagatg
gggataaaagatgatttactcagaggcatctacaactacggattcgagaagccctcggct
atacagcagcgagccgtgcttccaataatctccggccgtgacgtaatagctcaggcgcag
tctggtacgggaaagacttccatgattgcccttgctgtttgccaaattgtcgacaccaag
tcctccgaggtccaggctttgatattgtctcctacaagagagctggctgctcagactgag
aaagtaattttggctattggtgactatattaatattcaggcacatgcttgtattggaggt
aaaagtgttggcgaggatattcgaagattagaacatggagttcaagtggtgtcagggaca
cccggaagagtttgtgacatgattaagaggagaactctgcgaaccagatccataaaattg
ttaattctcgatgaatctgatgaaatgctgagtcgaggttttaaggatcagatttatgat
gtttaccgatatcttcctccagaactccaggttgtattgatatctgcaacccttccaaat
gaaatactggagatcacaagcaaattcatgtctgatccagttcgtattcttgtaaaacgt
gatgaattgactctggagggcatcaaacaattctttgttgcagtagagagagaggaatgg
aaatttgatactctctgtgatttgtatgatacccttaccattactcaggctgttattttc
tgtaacacgaagaggaaggtggattggctaacagcaaaaatgcgcgagaataatttcact
gtttcatctatgcatggagacatgcctcagaaagaaagagatgcaatcatgcaagaattc
cgctcaggtcaaactcgggttctgatcacaacagatgtttgggctaggggaattgatgtt
caacaggtttccctggtgattaattatgatcttcccaacaaccgagagctttacattcat
cgaatcggtcggtctggtcgttttggaagaaagggtgttgctataaactttgtgaaaagt
gatgacatcaaaatcttaagggacatagagcaatattacagtactcagattgatgaaatg
ccaatgaacgtggctgatctaatttaa
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